Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 201 3e-46 seq1 136 9e-27 >seq5 Length=1013952 Score = 201 bits (222), Expect = 3e-46 Identities = 473/704 (67%), Gaps = 15/704 (2%) Strand=Plus/Minus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524 || ||| ||| | || || ||||||| || || ||| | | |||| || |||| || Sbjct 378388 TACTCACGCTTCACCAACATTATTTAATGCTGGTACTCCTCACGCACAAATGTCTTCATG 378329 Query 110525 CTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC 110584 |||| | | | || || || |||||||| || |||||||||||| || | || || Sbjct 378328 CTTTTTAGTTGCTATGAAAGACGATTCTATCGATGGTATTTATGATACTTTGAAGCAATG 378269 Query 110585 TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA 110644 |||| | ||||| || | |||| || |||||| | ||| ||||| | ||| | || | Sbjct 378268 TGCTTTGATTTCCAAGACTGCTGGTGGTATTGGTTTACACATTCATAACATTAGATCTAC 378209 Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGT 110704 || || |||| || | || ||| |||| | || | |||||||| | ||||| Sbjct 378208 TGGTTCATATATTGCCGGTACTAATGGTACTTCTAACGGTATCATTCCAATGATTAGAGT 378149 Query 110705 CTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGC 110761 |||||| ||||||||| |||||| | || || ||| || ||| || | || || Sbjct 378148 TTTCAACAACACTGCAAGATATGTTGACCAGGGGGGTAACAAAAGACCAGGTGCTTTCGC 378089 Query 110762 TATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA 110821 | | || | ||||| |||||||| ||||| ||||| ||| | || || | || ||||| Sbjct 378088 TTTATACATTGAACCATGGCATTCTGATATCTTTGATTTCATCGATATTAGAAAGAATCA 378029 Query 110822 AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATT 110881 || ||||| ||||| | ||| |||| || | |||||| ||||||| || Sbjct 378028 CGGTAAGGAAGAGATCAGAGCTAGAGATCTATTCCCGGCCTTATGGATTCCAGATTTGTT 377969 Query 110882 CATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC--GTTCTCCT 110939 ||||| | ||| | | |||| ||| || |||| | ||| | || | ||| Sbjct 377968 TATGAAGAGAGTTGAGCAGAATGCTCAATGGACT-TTAT-TCTCCCCTTCCGAAGCCCCT 377911 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA--AAATATGAAAAAG 110997 ||| || || | || || | || ||||||| ||||| | ||||||||| ||| Sbjct 377910 GGTTTACACGAACTTTACGGTGATGAATTTGAAG--CTTTATATACCAAATATGAAGAAG 377853 Query 110998 AAGGCA-AGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 |||||| || | ||||| || | |||||| | || |||| || | ||| | Sbjct 377852 AAGGCAGAGGTAGACAAAC--TGTCAAGGCTCAAAAGCTATGGTATGCTATTTTAGAAGC 377795 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 |||| ||||| || ||||| | ||| || || || ||| | |||| ||||| || Sbjct 377794 ACAAACGGAAACAGGCACTCCATTTATGTTATACAAGGATGCTTGTAATGAAAAATCCAA 377735 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 |||| ||| || || || |||||||| ||| |||||||||| Sbjct 377734 CCAAAAGAACTTGGGTACTATTAAGTCATCTAACTTGTGCTGTG 377691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 374/582 (64%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 || ||||||||| | || || | | | ||||| ||||| ||| || | |||||| Sbjct 647139 TTCCCAATTAAATACCATGAAATCTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGG 647198 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAA---ATTAACCTTG 131551 |||| ||||| || ||| | | || |||| | |||| ||| | || ||||| || Sbjct 647199 ACTGCAGAAGAAATTGATTTATCAAAGGATACTCATGACTGGAACAACAGATTAAA--TG 647256 Query 131552 AATGAAAAAGATTTTG--TTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 || | ||||||||| |||| | |||| | || ||||| || | || || |||| Sbjct 647257 AAAGCGAAAGATTTTTCATTTCAAGAGTTTTAGCTTTCTTTGCAGCCTCCGACGGTATTG 647316 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 ||| || || | ||| || || | ||| | | ||||| |||| | | | Sbjct 647317 TTAACGAGAACTTGGTTGAAAACTTTTCTGCCGAAGTCCAAATTCCAGAAGCCAAGTGTT 647376 Query 131670 TCTACACATTTCAAGCCGCTGTTG-AATCTATTCATAGCGAGATGTATTCATTATTGATT 131728 ||||| |||| || || || || || || || | || ||||||||||| Sbjct 647377 TCTACGG-TTTCCAGATCATGATGGAAAACATCCACTCTGAAACTTACTCATTATTGATC 647435 Query 131729 GAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTT 131788 || | |||||| || | | || | ||||| ||||| | | | || Sbjct 647436 GACACCTATGTTAAGGATCCAAAGGAGGCTGACTTCTTATTCAATGCTATTGAGACTATT 647495 Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATT--CAA-GATGATTCCGCT 131845 ||| || || | || || || ||||| || | |||||| ||| || || ||| Sbjct 647496 CCTTGCATCAAGGAAAAGGCTGACTGGGCCATGAGATGGATGAACAACGAAAATG--GCT 647553 Query 131846 AATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCT 131905 ||| | | |||| | || || |||||| ||| |||||||| ||||| || ||| | Sbjct 647554 TATTCGCCGA-AAGATTAGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCA 647612 Query 131906 TTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAAT 131965 || | ||||||||||| | || ||| | || | ||||| || | | || || ||| Sbjct 647613 TTTGCTTCTATCTTTTGGTTGAAAAAGAGAGGCCTAATGCCGGGCTTAACTTTCTCTAAT 647672 Query 131966 CAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 |||| || | |||||||||| || || ||||| |||||| Sbjct 647673 GAATTGATTTGTAGAGATGAAGGTTTACACACTGATTTTGCT 647714 >seq1 Length=3681944 Score = 136 bits (150), Expect = 9e-27 Identities = 320/477 (67%), Gaps = 7/477 (1%) Strand=Plus/Minus Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAG 110744 |||||||||||| ||| || ||| |||||| |||||||| | |||||||| ||| Sbjct 1060691 GTTCCAATGTTACAAGTGTTTAACAGCACTGCCAAATATGTTGACCAAGGTGGAAATAAA 1060632 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 ||| || | || ||| || | ||||||||||| || ||||| |||||||| ||| Sbjct 1060631 AGACCGGGTGCGTTCTGTATATACTTAGAACCTTGGCACTCTGATATTTTTGAATTTTTA 1060572 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | | |||||||| ||| || ||| | ||||| ||||||||||||||| || | Sbjct 1060571 GACTTAAGGAAAAATCACGGAAAAGAGGAAAAGAGAGCCCGTGATTTATTTTATTCACTT 1060512 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | |||||||||||| | ||| || | |||| |||| | | | | Sbjct 1060511 TGGATACCTGATTTATTCATGGAGAAGGTTGAAAATAATGAAGATTGGTGTTTGTTTTCG 1060452 Query 110925 CCTCAT-CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 || ||| | ||||| || ||| ||||| |||| || | | | | || || Sbjct 1060451 GAAGATACGTGC-CCTGGATTAAGCGATTGCTATGGGGAAGAATTCGTAAAATTATATGA 1060393 Query 110984 AAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA-TTCCAGCTCAAGAACTTTGGTTCA 111042 |||||| || | ||| ||| | || || ||| | ||| ||| || | ||| | Sbjct 1060392 AAAATACGAGACTGAA-AAAAGATACGTTAAGAAAGTGAAAGCCCAAAAATTATGGCACT 1060334 Query 111043 AAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTA 111102 || | | || ||| |||||||||| ||| | | |||||||||||| | Sbjct 1060333 CTATATTGGTTTCCCAAACGGAAACTGGAAATCCATTCTTGTTGTATAAAGATGCCTGCA 1060274 Query 111103 ATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 | || || ||||||| |||||| || |||||||| || || || ||||||| Sbjct 1060273 ACGTGAAGTCGAATCAAAAGAATTTGGGTACAATTAAATCATCAAACTTATGCTGTG 1060217 Score = 125 bits (138), Expect = 2e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || |||| ||| | || ||| | ||||| ||||| ||||||||||| Sbjct 344602 CATTTGATGGATGATGACCCGGTGTTATTTAATCGTCAACCCTCACTTCATAAAATGTCC 344543 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTAAGTG 305426 ||||||||||||| ||||||||| ||| | ||| | ||| || | ||| || | Sbjct 344542 ATGATGGCTCATAGAGTCAAAGT--TATGCCATATTCAACGTTCAGAATGAATCTATCAG 344485 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | ||||||||||| ||||||||||| |||||||||||| | ||||| || |||| Sbjct 344484 TTACTTCTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCCCAAT 344425 Query 305487 CAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGT 305526 | | | || | |||||||||| |||| ||| |||| Sbjct 344424 CGTACGAAACTAGAGCTGAATTATCCCAAATTTGTGCTGT 344385 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 305284 TGAA-ATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATA 305342 |||| ||| |||||||||| ||||| | | || |||| ||| | ||||||| Sbjct 151463 TGAACATTGGTGATATTGTTGAAAGACACATTGAGGATGGTGATATAGTTTTATTCAATA 151404 Query 305343 GGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGG 305400 | ||||| || |||||| | | ||||| || | ||| | ||||| |||| || | Sbjct 151403 GACAACCTTCGTTGCATAGACTATCTATTCTGTCGCATTTTG-CAAAG-ATTAGACCTTG 151346 Query 305401 ATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGA 305460 || || |||| || | | ||| |||||| ||||||||||| ||||| ||||| || Sbjct 151345 GAGAACCTTCAGATTGAACGAATGTGTTTGTACCCCTTATAATGCCGATTTCGATGGTGA 151286 Query 305461 TGAAATGAATATGCATGTACCTCAA 305485 |||||||||| | ||||| |||||| Sbjct 151285 TGAAATGAATCTACATGTTCCTCAA 151261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812313406752