Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 181 8e-41 seq1 134 1e-26 >seq5 Length=1013952 Score = 181 bits (200), Expect = 8e-41 Identities = 573/873 (66%), Gaps = 29/873 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| |||| |||||| |||| ||||| || |||||||||||||| || || | Sbjct 647127 AGATTTGTTTTGTTCCCAATTAAATACCATGAAATCTGGCAAATGTACAAGAAGGCTGAA 647186 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTA------GCACATT 43808 || || || ||||| ||||||||| ||||||| | || || || | | ||| Sbjct 647187 GCTTCTTTCTGGACTGCAGAAGAAATTGATTTATCAAAGGATACTCATGACTGGAACAAC 647246 Query 43809 GGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTG 43868 |||| || ||| | |||| | ||| || || ||||| || || ||||| | Sbjct 647247 AGATTAAATGAAAGC-----GAAAGATTTTTCATTTCAAGAGTTTTAGCTTTCTTTGCAG 647301 Query 43869 CGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTAC 43928 | |||||| || || || || || |||||| ||| | ||||| ||| | | Sbjct 647302 CCTCCGACGGTATTGTTAACGAGAACTTGGTTGAAAACTTTTCTGCCGAAGTCCAAATTC 647361 Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 ||||||| ||||| || || || || || || ||||| || || || |||| | Sbjct 647362 CAGAAGCCAAGTGTTTCTACGGTTTCCAGATCATGATGGAAAACATCCACTCTGAAACTT 647421 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATG 44048 || | |||| || || || | || ||| | ||| | || || |||| Sbjct 647422 ACTCATTATTGATCGACACCTATGTTAAGGATCCAAAGGAGGCTGACTTCTTATTCAATG 647481 Query 44049 CGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT 44108 | || || || | ||| || || | || || ||||||||| | | |||||| || Sbjct 647482 CTATTGAGACTATTCCTTGCATCAAGGAAAAGGCTGACTGGGCCATGAGATGGATGAACA 647541 Query 44109 C---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 ||||| | || | ||| || | || || ||||| | ||| ||||| || |||| Sbjct 647542 ACGAAAATGGCTTATTCGCCGAAAGATTAGTTGCCTTTGCTGCTGTCGAAGGTATCTTCT 647601 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 | || || || ||||| | || |||||||| || || |||| | ||||| || || | Sbjct 647602 TCTCTGGTTCATTTGCTTCTATCTTTTGGTTGAAAAAGAGAGGCCTAATGCCGGGCTTAA 647661 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT 44285 | || || ||||| || || || | |||||||| ||||| ||||||||||| || | Sbjct 647662 CTTTCTCTAATGAATTGATTTGTAGAGATGAAGGTTTACACACTGATTTTGCTTGTTTAT 647721 Query 44286 TACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAG---ATATTGTTG 44342 || || | | | || || | | || ||| |||| |||| | | ||| || Sbjct 647722 TA-TTCTCTCAC-ATGA-ACAACACTCC-AAATG-AAGA-AATTGTTGTCAAGATTATTA 647775 Query 44343 TAGAGGCAGTAAAGATAGAACAAGA-ATTTATGACAACAGCATTACC-TGTAAATTTAAT 44400 || ||||| | || ||| |||| || | || || ||||| ||| | ||| | Sbjct 647776 CTGAAGCAGTTGACATTGAA-AAGAGATACTTCACGGATGCCTTACCATGTGCA-TTATT 647833 Query 44401 AGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTT 44460 || ||||| | | |||||| |||||| |||| | |||| ||| | ||| | || Sbjct 647834 GGGTATGAACGCAGAATTGATGTGCCAATACGTTGAGTTTGTTGCTGATAGATTATTATT 647893 Query 44461 GGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATAT 44520 | |||||| | || ||||| | || | ||||| || || |||||||||||||| Sbjct 647894 ATCTTTAGGTTGCAAGAAGCACTACAAGGTTAACAACCCATTCGACTTTATGGAAAATAT 647953 Query 44521 TTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 ||| || | || || || ||||| |||||||| Sbjct 647954 TTCTTTAGCTGGTAAGACCAACTTCTTTGAAAA 647986 >seq1 Length=3681944 Score = 134 bits (148), Expect = 1e-26 Identities = 291/435 (67%), Gaps = 24/435 (6%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 || || ||||| ||| ||| ||||| || ||||| ||| || || |||| | | | Sbjct 2341156 TACGGTCCACCAGGTACTGGTAAAACTTTGATTGCTAGACAAATTGGTAAGATGTTGAAC 2341097 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 |||| ||||| |||||||| |||||||||||||| || ||||| || ||| | Sbjct 2341096 GCAAAGGAACCT---AAAATTGTCAATGGTCCTGAAATTCTATCCAAATACGTTGGTTCA 2341040 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTT------GCTGACGCTGAAGAAGAACAAAAACGT 19530 |||||||||||| | || ||||||| || || || || | || |||| || Sbjct 2341039 TCGGAAGAAAATATCAGAAATTTGTTTAAGGATGCAGAGGCCGAGTATAAATCAAAAGGT 2340980 Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590 ||| | ||| || || || || || | |||||||| || | | | || Sbjct 2340979 GAAGG------ATCTTCGTTACATATCATTATCTTTGATGAATTAGATTCTGTTTTCAAA 2340926 Query 19591 CAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTG 19644 |||||||| || || || | || || ||| | |||||| ||||| | | Sbjct 2340925 CAAAGAGGCTCAAGAGGTGATGGTACCGGTGTTGCTGATAATGTTGTTAATCAGTTATTA 2340866 Query 19645 TCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | ||| | || |||||| | ||| ||||||| |||||||||||||| |||||||||||| Sbjct 2340865 GCCAAAATGGATGGTGTTGATCAATTGAATAACATTTTAGTTATTGGTATGACTAATAGA 2340806 Query 19705 CTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 || || ||||| || || || | |||| || | || ||| | | | || ||| Sbjct 2340805 AGAGATTTGATAGATAGTGCATTGCTGAGACCGGGAAGATTTGAAGTTCAAGTTGAGATT 2340746 Query 19765 AACTTACCCGATGAA 19779 | ||||| |||||| Sbjct 2340745 CATTTACCTGATGAA 2340731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40695 CCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTT 40754 || ||| |||| || ||| | |||| ||||||||| | | |||||| | |||||| Sbjct 404674 CCTTTGTTAACCACTAAACGTGTCTTTTTTAAAGGCATTTTACATGAACTGCTCTGGTTT 404615 Query 40755 ATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCG 40814 || |||| ||||| ||||||||||| || | |||| || || | || ||| | | Sbjct 404614 GTCCAAGGGTGTACAGATGCTAAGAAACTAACCGAAAAGGGCGTCAAGATCTGGGAAGGT 404555 Query 40815 CACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTT 40874 || | |||| | |||||| | | || || ||||||| |||||||| ||| Sbjct 404554 AACGGATCTAGAGAATATTTAGATTCACTTGGTCTAACAGATAGGAGAGAAGGTGACCTT 404495 Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 || || || ||||| || || | | |||||||||| ||| Sbjct 404494 GGCCCAGTGTATGGTTTCCAATGGAGACATTTTGGTGCA 404456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455844992160