Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 235 7e-57 seq1 107 2e-18 seq7 84.2 3e-11 >seq5 Length=1013952 Score = 235 bits (260), Expect = 7e-57 Identities = 1118/1749 (64%), Gaps = 47/1749 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||| | || | ||||| |||| | ||||| || | | ||| Sbjct 376760 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTA 376819 Query 110429 GACATCGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG-AAGCGC 110485 ||| ||||| |||| |||| |||||| |||| ||| |||||| |||| | Sbjct 376820 CCCATAGTTGGGTTCTTTAAGTGAAT--GTTCATTGATTGAGATTGATCAATGTAAGCAC 376877 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 | | | || ||||||||||| | ||| ||||||||| ||||| || Sbjct 376878 CTCTATCA-GCAGCCATATCAATAATGCTCTTTTGTGAAATTTCCCAGACTGTCTTGTAT 376936 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | ||||| | || ||||| || | | | || || || || || | | | Sbjct 376937 AATTTCTTTAATTCGTCTGGAATGTTCGGTAAGTTTTGAATAGAGCCATTATCTTGAATG 376996 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACC--AATCTTCTTGAGGTCATTGACGAGGT 110663 |||| || ||||||| | | | ||| ||||| |||| || | || | | | | Sbjct 376997 ATGAAATTCTTCATAGCATCGCTCCATAGACCTAAATCAACTAAATCTCTTAGCAAATAT 377056 Query 110664 GCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGT 110723 | ||||||||| || |||||||| || |||||| ||| ||||| | |||| Sbjct 377057 GG--GTTGACAATTTGGAATTCACCTGCTAGAACTCTTCTTGAGTAAATGTTAGAAGTGT 377114 Query 110724 ATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 110783 ||||||| ||||| || || | |||||| ||||||| || || || || |||||||| | Sbjct 377115 ATGGTTCGAAGCACTCGTTGTAACCCAAAATTTGTGAAGTTGAAGCAGTAGGCATTGGAG 377174 Query 110784 CCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 ||| ||| | | ||| | | ||| | || || | |||||| | | |||||| | Sbjct 377175 CCAGCAATAAAGAGTTTCTCAAACCGTGCTTGGAAATTCTTTCCTTTAATAGATCCCAAT 377234 Query 110844 CG--TAGTTGAGCTTGGTTTCACCTTCCCACAT--GTCAAACTGAAGCACCCCTTGGGAC 110899 | || | || |||| ||| || || ||| ||| || || | | ||||| || Sbjct 377235 CCCATAAATCAG-TTGGCTTC---TTACCCCATAAGTCGAATTGTAATAGACCTTGAGAA 377290 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG--GCTTCAGCCAATTCACAGCTCG 110957 || |||||||| | || | ||||| | || | | || | ||||||| | Sbjct 377291 GCTGGAGAACCTTGGAAATTCTCATATGGCCCATCTAAGATTGA--CAATTCAATCGAAG 377348 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 | || | | || || |||||||||||||| || || |||| ||| |||| || Sbjct 377349 CTTCTAAAGCAGCATGGTACATGGTTTCAAAAATTTGAATGTTCAAGTCCCTGGCCTCTG 377408 Query 111018 CTGAATCAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCA 111074 |||||||||| ||| | ||| || || || || || | |||||||||||| | Sbjct 377409 GGGAATCAAATG-GTAAT--CTCAATTGCATGAAAACGTCAGCCAAACCTTGAACACCAA 377465 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTC 111134 | |||| ||||||| | ||| ||||| ||| || ||||| || ||| | |||| Sbjct 377466 CAGCAATTGGTCTGTTTTTCATGTTAGATGTTCTAGCCTCTTCAACAGGGTAATAGTTTC 377525 Query 111135 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCAT 111194 ||||||||| ||| | || || | ||||| ||| || | |||||| ||||||||| Sbjct 377526 TGTCAATGATCATGTTCAAGTTCTTAGCAACAACCTTAGTAACTTCATGCAGTTTTTCAA 377585 Query 111195 AATCAAAAGTGCGAGTCTCT---TC--ATT-GACATACTTTGGAAGGGCGATTGATGCCA 111248 | | | | | |||| || ||| ||| | || | || | || || | Sbjct 377586 AGTTATACCATGATGACTCTGAATCCGATTCGACGAATGCAGGCAAAGCCACGGAAGCTA 377645 Query 111249 AATTGCAAACAGC--CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 || || || || | ||| | | | | || || | |||||| || ||||| Sbjct 377646 GGTTACAGACGGCAACTTCTTCTGGTGAG--GAATATTCAACAATTTCACAGCACAAGTT 377703 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 || |||||| || ||||| ||||||||||| || | || || ||||||||||| Sbjct 377704 AGATGACTTAATAGTACCCAAGTTCTTTTGGTTGGATTTTTCATTACAAGCATCCTTGTA 377763 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGG 111425 | ||| | || || || || ||||| |||| || | |||||| | ||| | | | | Sbjct 377764 TAACATAAATGGAGTGCCTGTTTCCGTTTGTGCTTCTAAAATAGCATACCATAGCTTTTG 377823 Query 111426 CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 111485 | || | ||| | | | | || || | || || || || || | ||||||| Sbjct 377824 AGCCTTG-ACAGTTTGTCTACCTCTGCCTTCTTCTTCATATTTGGTATATAAAGCTTCAA 377882 Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 | || ||||| ||| | ||| || || | | || |||| | || ||||| Sbjct 377883 ATTCATCACCGTAAAGTTCGTGTAAACCAGGGGCTTCGGAAGGGGAGAATAAAGTCCATT 377942 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 || || | |||||| | |||||| || | ||||||||||| | || | || |||| Sbjct 377943 GAGCATTCTGCTCAACTCTCTTCATAAACAAATCTGGAATCCATAAGGCCGGGAATAGAT 378002 Query 111606 CTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 111664 ||||| | | || | ||||| | ||| || || || | || | ||| || | |||| Sbjct 378003 CTCTAGCTCTGATC-TCTTCCTTACCGTGATTCTTTCTAATATCGATGAAATCAAAGATA 378061 Query 111665 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTG 111720 || | |||||||| |||| || | |||| || || |||| | ||| || | Sbjct 378062 TCAGAATGCCATGGTTCAATGTATAAAGCGAAAGCACCTGGTCTTTTGTTACCCCCCTGG 378121 Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780 | ||||| | || ||| ||| || || | || ||||||||| ||||| | || Sbjct 378122 -TCAACATATCTTGCAGTGTTGTTGAAAACTCTAATCATTGGAATGATACCGTTAGAAGT 378180 Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 |||||| || || |||| || | | | ||| | | ||| ||||| | ||||| Sbjct 378181 ACCATTAGTACCGGCAATATATGAACCAGTAGATCTAATGTTATGAATGTGTAAACCAAT 378240 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 ||| ||||| ||| || || ||||| | | | | ||| |||| ||||| | ||| Sbjct 378241 ACCACCAGCAGTCTTGGAAATCAAAGCACATTGCTTCAAAGTATCATAAATACCATCGAT 378300 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 111960 || || || || | || | | ||||| ||||| || | || |||||||| Sbjct 378301 AGAATCGTCTTTCATAGCAACTAAAAAGCATGAAGACATTTGTGCGTGAGGAGTACCAGC 378360 Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTC 112020 ||| || | ||||||| |||||| | || | || ||||| | || || || || Sbjct 378361 ATTAAATAATGTTGGTGAAGCGTGAGTAAAGTATCTTTCTGACATGTAGTTATAAGTTTC 378420 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 | ||| | |||| | || |||||||| || || | || | ||| | | || ||| Sbjct 378421 TATGACCTTAGCAATATTATCACCGTGGATACCAATAGAAACTCTCATAACTAAGTGCTG 378480 Query 112081 TGGGGTTTC 112089 ||| |||| Sbjct 378481 TGGTCTTTC 378489 Score = 102 bits (112), Expect = 1e-16 Identities = 346/529 (65%), Gaps = 25/529 (5%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| ||||||| |||| | |||||| ||||| || || Sbjct 647713 GCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTCATTAGAGAAAGTTAAGCCC 647654 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || | ||| ||||||||| | |||| ||| ||||| || ||||||||||| Sbjct 647653 GGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCA-AATGAACCAGAGAAGAAGAT 647595 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGA--GACTTTGCATCA 122835 ||| || ||| ||||| |||| | | ||||||||| ||| | | ||| | Sbjct 647594 ACCTTCGACAGCAGCAAAGGCAACTAATCTTTCGGCGAATAAGCCATTTTCGTTG--TTC 647537 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 122895 | |||| |||| ||||| | ||||| | || || || || | ||| | || || | Sbjct 647536 ATCCATCTCATGGCCCAGTCAGCCTTTTCCTTGATGCAAGGAATAGTCTCAATAGCATTG 647477 Query 122896 AATAA-----CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 122950 ||||| | || || || | |||||||| || |||| |||||| ||| | Sbjct 647476 AATAAGAAGTCAGCCTCCTT-----TGGATCCTTAACATAGGTGTCGATCAATAATGAGT 647422 Query 122951 ATGTTTCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCG 123009 | ||||| || | ||| ||| ||| | || | ||||||| | ||||| Sbjct 647421 AAGTTTCAGAGTGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAACACTTGGCTTCT 647363 Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069 || || || || | | ||| || | | | ||||| |||||| || ||||| Sbjct 647362 GGAATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAACAATACCGTCGGAG 647303 Query 123070 CCAGCAAAGAATGCCAGGATGTACTT--TATGAATTTCTTTTCATTTTCATTCA---GGG 123124 | |||||||| || | | ||| ||||| |||| ||||||| | | Sbjct 647302 GCTGCAAAGAAAGCTA--AAACTCTTGAAATGAAAAATCTTTCGCTTTCATTTAATCTGT 647245 Query 123125 TCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | |||||||| | | ||| || || ||||||| |||||| |||||||| Sbjct 647244 TGTTCCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCA 647196 >seq1 Length=3681944 Score = 107 bits (118), Expect = 2e-18 Identities = 221/320 (69%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || ||||| ||| ||||||||||| | ||| | |||||| |||||||| || | Sbjct 2805783 AAACCGTCCATTTCGACTAGTAATTGATTCAATGTGTTTTCTCTTTCATCATTA-CTTCC 2805841 Query 11600 AT-ACCACCAGCACTGCG---TTG-CTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | ||| | | | || | ||| ||| || | |||||||||||||||| |||| || Sbjct 2805842 AGCACCTCTACC-CTTAGATCTTGACTTTCCGATGGCATCAATCTCATCAACAAAGATAA 2805900 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || | || |||||| | ||| | || || | || ||||| || ||||| |||| Sbjct 2805901 TAGAAGGAGCATTTTCTCTGGCAACTTTGAACAATTCACGAACTCTAGAAGCACCAACAC 2805960 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT-GAATGGGACATTTGATTCA 11773 |||||||||| || ||||| | | |||| || | || |||||| |||| | ||| Sbjct 2805961 CAACAAACATTTCAACAAATTCAGAACCAGA-AACAGAATAGAATGGAACATCAGCCTCA 2806019 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || | ||| ||| | || ||||| || |||||||| ||| | | || ||| Sbjct 2806020 CCAGCAGTTGCTTTGGCTAACAGAGTCTTACCGGTACCTGGAGGACCTGATAAAATGGCA 2806079 Query 11834 CCTCGGGGGATCTTGGCACC 11853 |||| || ||||| || || Sbjct 2806080 CCTCTCGGAATCTTAGCGCC 2806099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || ||||||||||| |||||||| || ||||| || || || || | |||||| Sbjct 1060162 ATCGATGCCAAATTACAAACAGCTGTTTCATCTTTCGATGAATATTCAACAATTTCACAG 1060221 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 |||||||| || ||||| || |||||||||||||| || |||| |||||| ||| Sbjct 1060222 CATAAGTTTGATGATTTAATTGTACCCAAATTCTTTTGATTCGACTTCACGTTGCAGGCA 1060281 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || || || | || | | || | || || ||||| || || Sbjct 1060282 TCTTTATACAACAAGAATGGATTTCCAGTTTCCGTTTGGGA 1060322 >seq7 Length=781880 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 || ||| | ||||||||| |||| ||||| |||| |||||||||||| |||||| Sbjct 265530 TACGGTAGAGTTGCACCAAGATCTGGTCTTGCTGCAAAGCATGGTATTTCCACTGGTGCT 265471 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||||||||| |||| || | ||| || | || | || | ||||| ||| |||| Sbjct 265470 GGTGTTATTGACGCCGATTACAGAGGCGAGATTAAGATTATTTTATTCAACCACTCAGAC 265411 Query 164724 AAAGACTTTGAGGT 164737 || || || ||||| Sbjct 265410 AAGGATTTCGAGGT 265397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031748787200