Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq5 109 6e-19 seq2 105 8e-18 seq9 82.4 9e-11 >seq1 Length=3681944 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || ||||| || ||| | ||||| || || Sbjct 1219339 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCTC 1219280 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||| | || || || |||||||| || ||||| || || || Sbjct 1219279 AGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCA 1219220 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| ||||||||||||||| | || |||| | | ||| || | ||||| || Sbjct 1219219 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACAA 1219160 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | |||||||||||||| | || ||||||| Sbjct 1219159 CATTCAAAAGGAATCCACCTTGCACTTAGTCTT 1219127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 80046 ATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT 80105 |||||| || || || || || || |||||||| | || | ||||||| | ||||| Sbjct 1059279 ATAGTAAATACCAGTTTTTAGTCCTTTCTTCCAAGCATAAAAGTGCATACTTGTAAGCTT 1059338 Query 80106 CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCC 80165 || | ||| || | | |||||| | ||| | || ||||| ||| ||||| | | Sbjct 1059339 CGACATTGTTGGTTCCCTCATGAATAAGTTTAATGATTGAGAATGATCAATGAATGGTGC 1059398 Query 80166 ACGATCTGCCGCCATTTCAAT-AATTGACTTTTGTGGAATTTCCCATACTGTACGATACA 80224 ||| || || | ||| ||||| || || |||||| ||||||||||| ||||| ||||| Sbjct 1059399 ACGGTCAGCTGACATATCAATTAAATG-CTTTTGAGGAATTTCCCAAACTGTTTTATACA 1059457 >seq5 Length=1013952 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||| || ||||| | ||||||||||| ||||| | |||||| || | | ||| Sbjct 376760 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTA 376819 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | || ||||||| | | ||||||| || ||||| ||| ||| |||| || Sbjct 376820 CCCATAGTTGGGTTCTTTAAGTGAATGTTCATTGATTGAGATTGATCAATGTAAGCACCT 376879 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | ||| || ||||| |||||||| |||||||| ||||||||| ||||| Sbjct 376880 CTATCAGCAGCCATATCAATAATGCTCTTTTGTGAAATTTCCCAGACTGT 376929 >seq2 Length=3419278 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || ||||| || ||| | ||||| || ||| Sbjct 1617318 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCATCC 1617259 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || || ||||| || || || || || || Sbjct 1617258 GACACTATTGACAACGTTAAGTCAAAGATCCAAGATAAGGAAGGTATCCCACCTGATCAA 1617199 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| ||||||||||||||| | || |||| | | || || | ||||| || Sbjct 1617198 CAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAAC 1617139 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||| | || | |||||| Sbjct 1617138 ATCCAAAAGGAATCAACTTTACACTTGGTCTTG 1617106 >seq9 Length=470967 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || ||||| || || | |||||||| || Sbjct 292509 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCTTCC 292450 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||| | ||||| || || ||||| || ||||| || || || Sbjct 292449 GATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAA 292390 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || | |||| ||||||||||| ||| | || || Sbjct 292389 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGA 292355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310171875840