Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01]
32 sequences; 15,086,366 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 118 1e-21
seq5 109 6e-19
seq2 105 8e-18
seq9 82.4 9e-11
>seq1
Length=3681944
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | || || ||||| || ||| | ||||| || ||
Sbjct 1219339 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCTC 1219280
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | ||| | || || || |||||||| || ||||| || || ||
Sbjct 1219279 AGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCA 1219220
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| | |||| ||||||||||||||| | || |||| | | ||| || | ||||| ||
Sbjct 1219219 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACAA 1219160
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
| |||||||||||||| | || |||||||
Sbjct 1219159 CATTCAAAAGGAATCCACCTTGCACTTAGTCTT 1219127
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 80046 ATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT 80105
|||||| || || || || || || |||||||| | || | ||||||| | |||||
Sbjct 1059279 ATAGTAAATACCAGTTTTTAGTCCTTTCTTCCAAGCATAAAAGTGCATACTTGTAAGCTT 1059338
Query 80106 CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCC 80165
|| | ||| || | | |||||| | ||| | || ||||| ||| ||||| | |
Sbjct 1059339 CGACATTGTTGGTTCCCTCATGAATAAGTTTAATGATTGAGAATGATCAATGAATGGTGC 1059398
Query 80166 ACGATCTGCCGCCATTTCAAT-AATTGACTTTTGTGGAATTTCCCATACTGTACGATACA 80224
||| || || | ||| ||||| || || |||||| ||||||||||| ||||| |||||
Sbjct 1059399 ACGGTCAGCTGACATATCAATTAAATG-CTTTTGAGGAATTTCCCAAACTGTTTTATACA 1059457
>seq5
Length=1013952
Score = 109 bits (120), Expect = 6e-19
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106
|||||||| || ||||| | ||||||||||| ||||| | |||||| || | | |||
Sbjct 376760 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTA 376819
Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166
| | || ||||||| | | ||||||| || ||||| ||| ||| |||| ||
Sbjct 376820 CCCATAGTTGGGTTCTTTAAGTGAATGTTCATTGATTGAGATTGATCAATGTAAGCACCT 376879
Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
| ||| || ||||| |||||||| |||||||| ||||||||| |||||
Sbjct 376880 CTATCAGCAGCCATATCAATAATGCTCTTTTGTGAAATTTCCCAGACTGT 376929
>seq2
Length=3419278
Score = 105 bits (116), Expect = 8e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || | || || ||||| || ||| | ||||| || |||
Sbjct 1617318 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCATCC 1617259
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || || || || ||||| || || || || || ||
Sbjct 1617258 GACACTATTGACAACGTTAAGTCAAAGATCCAAGATAAGGAAGGTATCCCACCTGATCAA 1617199
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | |||| ||||||||||||||| | || |||| | | || || | ||||| ||
Sbjct 1617198 CAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAAC 1617139
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
||||||||||||| ||| | || | ||||||
Sbjct 1617138 ATCCAAAAGGAATCAACTTTACACTTGGTCTTG 1617106
>seq9
Length=470967
Score = 82.4 bits (90), Expect = 9e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || | || || ||||| || || | |||||||| ||
Sbjct 292509 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCTTCC 292450
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| ||||| | ||||| || || ||||| || ||||| || || ||
Sbjct 292449 GATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAA 292390
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560
|| | |||| ||||||||||| ||| | || ||
Sbjct 292389 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGA 292355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310171875840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |