Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq2 111 4e-19 seq6 95.1 3e-14 >seq1 Length=3681944 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | ||||| || ||||| ||||| || || | | ||| || || Sbjct 1219123 TCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTACC 1219182 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || ||||| | | |||||| ||||| |||| |||||||| Sbjct 1219183 ATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 1219242 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || || || |||||||| ||| ||| ||||| | |||||| Sbjct 1219243 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGACCTCTAAAGTGAT 1219302 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| || || | || || || || | ||||||| Sbjct 1219303 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTT 1219340 >seq2 Length=3419278 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | ||| || || ||||||||||| || || | | || || || Sbjct 1617103 TCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 1617162 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || || ||||| | | ||||| ||||| || | |||||||| Sbjct 1617163 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGGATACCTTCCTT 1617222 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||||||| || ||||| || || ||||| || ||| ||||| | |||||| Sbjct 1617223 ATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGATTCGACCTCTAAAGTGAT 1617282 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | || || || || | ||||| || Sbjct 1617283 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTT 1617321 >seq6 Length=821682 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 ||||||||||| || ||||| || ||||||||| ||||||| | ||| | || | ||| Sbjct 428727 CCAAAGAAGCATGGTAGAGGTGGTCAATCTGCTTTGCGTTTCGCCAGATTGAGAGATGAA 428786 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 ||||| || || || | |||||||||||||| || | ||| ||| || | || Sbjct 428787 AAGAGACATAATTATGTTAGAAAAGTTGCAGAAGTTGCTGTTCAGAATTTCATAACTAAC 428846 Query 139930 AAC-AAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 || ||||| |||| ||||| | |||| || ||||| || || |||||||| Sbjct 428847 GACAAAGTG-AATGTTGCTGGTTTAATTTTAGCCGGTTCAGCTGATTTCAAGAC 428899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151524747680