Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 129 4e-25 seq2 125 5e-24 seq9 86.0 4e-12 >seq1 Length=3681944 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| ||||||||||||||| | || || || || |||||| | || || || ||| Sbjct 1219340 AAATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCT 1219281 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| ||| | || | || || ||||| |||||| | || || ||| Sbjct 1219280 CAGACACCATTGACAATGTCAAGTC-CAAGATCCAAGACAAGGAAGGTATTCCACCTGAT 1219222 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | ||||| ||||| || || ||| ||||||| | | || ||| || ||| Sbjct 1219221 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTAC 1219162 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || ||||| || || ||||| ||||| || |||| || Sbjct 1219161 AACATTCAAAAGGAATCCACCTTGCACTTAGTCTTAAGATTAAGAGGTGG 1219112 >seq2 Length=3419278 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||||||||||||| | || || || || |||||| | || || || || Sbjct 1617321 AAGATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCA 1617262 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| || |||| | ||| || || || |||||| | || || || Sbjct 1617261 TCCGACACTATTGACAACGTTAAGTC-AAAGATCCAAGATAAGGAAGGTATCCCACCTGA 1617203 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | ||||| ||||| || || ||| | ||||| | | |||||| ||| || Sbjct 1617202 TCAACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTA 1617143 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || || || ||||| || || || || || |||| || Sbjct 1617142 CAACATCCAAAAGGAATCAACTTTACACTTGGTCTTGAGATTAAGAGGTGG 1617092 >seq9 Length=470967 Score = 86.0 bits (94), Expect = 4e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||||||||| | || || || || ||||| | || ||||| || Sbjct 292512 AACATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCT 292453 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||| ||| | || | ||||| || || |||||| | || || || Sbjct 292452 TCCGATACTATTGATAATGTGAAGTC-GAAAATCCAAGATAAGGAAGGTATTCCACCTGA 292394 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 |||||| | ||||| ||||| || |||||| | ||||||| Sbjct 292393 TCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGACG 292353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009468176256