Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq2 165 2e-35 seq9 127 5e-24 >seq1 Length=3681944 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | |||||||| ||||| | ||||| || | || ||||| || Sbjct 1219123 TCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTACC 1219182 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || |||||| || || |||||||||||||| Sbjct 1219183 ATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 1219242 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || ||||||||||||| ||| || ||||| ||||| Sbjct 1219243 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGACCTCTAAAGTGAT 1219302 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| || || || ||||| | ||| | |||||||| Sbjct 1219303 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTT 1219340 >seq2 Length=3419278 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||| ||||| ||||||| ||||| |||| |||||||| || Sbjct 1617103 TCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 1617162 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| ||||| | || ||||| || || || ||||||||||| Sbjct 1617163 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGGATACCTTCCTT 1617222 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || ||||| || | ||| || ||||| ||||| Sbjct 1617223 ATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGATTCGACCTCTAAAGTGAT 1617282 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || ||||| | ||| | |||||| || Sbjct 1617283 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTT 1617321 Score = 107 bits (118), Expect = 5e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || ||||| || || || |||||||||||||||||||| Sbjct 2643590 GAAGATTTGACCATCAGTAATGGAAATAACGTTAGTTGGAATATAAGCAGAAACATCACC 2643649 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 |||| ||||| | || ||||| || |||| || |||||||| ||| Sbjct 2643650 ACCTTGGGTTTCAATGACTGGTAAAGCAGTTAAGGAACCACCACCTAAA 2643698 >seq9 Length=470967 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225547 AAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGA 225606 || ||||| || ||||||| || || ||||| ||||| | || |||||| || || ||| Sbjct 292343 AATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 292402 Query 225607 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACG 225666 ||||||||||| |||||||| || ||||||| || || || || || | ||| || Sbjct 292403 ATACCTTCCTTATCTTGGATTTTCGACTTCACATTATCAATAGTATCGGAAGATTCAACC 292462 Query 225667 TCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| || || |||||||| | ||| | |||||| || Sbjct 292463 TCTAAGGTGATGGTCTTACCAGTTAAAGTTTTAACGAAAATTTGCATGTT 292512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530711062208