Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 123 6e-23 seq1 116 9e-21 >seq2 Length=3419278 Score = 123 bits (136), Expect = 6e-23 Identities = 176/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 177898 ATAT-ATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACG 177956 |||| || || | |||| || |||| |||||||||| ||||| | || || || || Sbjct 1617339 ATATCATTAATTTAGGTCAAGATGC---AAATTTTCGTTAAAACCTTAACTGGTAAGACC 1617283 Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||||| | ||||| ||| || ||||| || || ||||| || |||||| || || Sbjct 1617282 ATCACTTTAGAGGTCGAATCATCCGACACTATTGACAACGTTAAGTCAAAGATCCAAGAT 1617223 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || ||||| ||||| || || || || || | ||||| || || || || | |||||| Sbjct 1617222 AAGGAAGGTATCCCACCTGATCAACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGAT 1617163 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||| | |||| || ||| ||||||| |||||||| | || | || |||||| Sbjct 1617162 GGTAGAACTTTATCCGACTACAACATCCAAAAGGAATCAACTTTACACTTGGTCTTGAGA 1617103 Query 178137 CTCAGA 178142 | ||| Sbjct 1617102 TTAAGA 1617097 >seq1 Length=3681944 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || ||||| | ||||| ||| ||||||| Sbjct 1219335 CAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCTCAGAC 1219276 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| ||||| || || || || || ||| Sbjct 1219275 ACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAA 1219216 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || || | | || || ||| | Sbjct 1219215 AGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACAACATT 1219156 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || |||| | || || ||| | ||| Sbjct 1219155 CAAAAGGAATCCACCTTGCACTTAGTCTTAAGATTAAGA 1219117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730706470208