Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq23 118 9e-22 seq64 116 3e-21 seq61 107 2e-18 >seq23 Length=343512 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| ||||| |||| ||||||||||||||||| || ||||| ||||| | Sbjct 313250 CCACCTCTCAGTCTGAGGACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 313191 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | ||||||| ||||| || || || |||| ||||| |||||||| || Sbjct 313190 AGAGTTCTGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGG 313131 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| || || | |||| Sbjct 313130 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 313071 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| || ||||| ||||| | || ||||| || ||||||||| Sbjct 313070 TCGAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATT 313023 >seq64 Length=816055 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| || || |||| ||||||||||||||| ||||| ||||| ||||| | Sbjct 728724 CCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAA 728665 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | ||||||| || || || || || | || | ||| |||||||| || Sbjct 728664 AGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGG 728605 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| |||||| || || | ||| || || | ||| Sbjct 728604 ATTCCTTCTTTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCGACC 728545 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||| ||||| || || ||||| || || |||||||||| Sbjct 728544 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTTGA 728493 >seq61 Length=567400 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| |||||| || ||||||||||||||||||||||| | Sbjct 444695 CCACCTCTCAATCTCAAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGAT 444754 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| |||| || || || || || || |||||||||| |||||||| ||| Sbjct 444755 AACGTTCTACCGTCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGG 444814 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || || || || || | ||| ||| ||| || ||| Sbjct 444815 ATTCCTTCCTTATCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACC 444874 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| || ||||| || || |||||||| Sbjct 444875 TCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 444921 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| ||||| || ||||||||||||||||| || || | | Sbjct 445151 CCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGAC 445210 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| |||| || ||||| || || ||| |||| ||||| |||||||| || Sbjct 445211 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGG 445270 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || || || || || | ||| ||| ||| || ||| Sbjct 445271 ATTCCTTCCTTATCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACC 445330 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| || ||||| || || |||||||| Sbjct 445331 TCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258860345256