Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq45 361 6e-95 seq23 116 4e-21 seq64 107 2e-18 >seq45 Length=88998 Score = 361 bits (400), Expect = 6e-95 Identities = 592/845 (70%), Gaps = 20/845 (2%) Strand=Plus/Minus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||| || | ||||| || | |||| || || |||| |||||||| ||||| |||| Sbjct 65708 GGTTTGTCTTGTTCCCTATCAAGTACCACGAGATTTGGCAGATGTACAAGAAGGCAGAGG 65649 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | ||||||||||||| ||||| | || |||||||||||| | ||||||| | | Sbjct 65648 CCTCGTTCTGGACCGCAGAGGAAATCGATCTGTCCAAGGACCTGCACGACTGGAACAACA 65589 Query 116724 ---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 | |||||||||||| | | || | | ||| ||||||| || || || | Sbjct 65588 GACTCAACGACAACGAGAGATACTTTGTTTCGAGAGTGTTGGCCTTCTTTGCTGCTTCGG 65529 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 ||||||| ||||||||||| |||||||| ||| || |||||||| || | |||| Sbjct 65528 ACGGCATTGTCAACGAGAACTTGGTCGAGAACTTCTCTGCCGAGGTGCAAGTTCCTGAGG 65469 Query 116841 CGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 | ||| |||||||| || |||||| ||||||||| | |||||||||| ||| ||| Sbjct 65468 CCAAGTGTTTCTACGGGTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGC 65409 Query 116901 CCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCA 116957 || |||||||| ||||| | | || ||| | || ||| ||| ||||||| Sbjct 65408 TTCTGATCGACACCTACGTCAAGGACCCTAAGGAAGCTGAGTTCCTTTTC---AACGCCA 65352 Query 116958 TCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA 117017 | ||||| || || || |||| ||||||||||| ||||| || | |||||| || | Sbjct 65351 TTGAGACCATCCCATGTATCAAGGAGAAGGCCGAATGGGCCATGAGATGGATCAACGACG 65292 Query 117018 GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT 117077 || ||| || | |||| | || || || || || ||||| ||||| | ||||| | Sbjct 65291 AGGAAGCCCTGTTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTTCTTCT 65232 Query 117078 CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTT 117137 | ||| || ||| | || || ||||||||||| | || || ||||| || ||||| | Sbjct 65231 CTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCTGACCT 65172 Query 117138 TCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 || |||||| | |||| ||| ||||||||||||||| ||||||||||||| |||| | Sbjct 65171 TCTCGAACGAGTTGATCTGCAGAGACGAGGGTCTGCATACCGACTTTGCCTGTCTGCTCT 65112 Query 117198 TCAAGCATTTGGTGCAGCGACC----GAGCG-CGGCGCGCGTCAGGGAGATCGTCACCGA 117252 || ||| | || | || |||| | || || ||| ||||| ||||||| Sbjct 65111 TCTCGCACCT-CAACAACACCCCAAACAGCGACATCGTGC-TCA---AGATCATCACCGA 65057 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 || |||| ||||| || | | | ||||||| || ||||| || |||||||| | Sbjct 65056 GGCCGTCGAGATCGAAAAGAGATACTTCACCGACGCCCTGCCTGTCAACCTGCTGGGTAT 64997 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || ||| | ||||| || ||| | ||||| || || ||| ||||||| | || Sbjct 64996 GAACTGCAACCTGATGTGCCAGTACGTGGAGTTTGTTGCTGACCGGCTGCTTTTATCTCT 64937 Query 117373 GGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CT 117431 || | || |||||||||||| | | |||||| | ||||| ||| | |||||| || Sbjct 64936 GGGCTGCAAGAAGCACTACAACGCCACAAACCCGTTCGACTTCATGGAGAACATCTCTCT 64877 Query 117432 TGGAG 117436 || || Sbjct 64876 TGCAG 64872 >seq23 Length=343512 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || || |||||| |||| || || | | Sbjct 313023 AATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 313082 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| ||||| || || | ||||| ||||| ||||| | |||| Sbjct 313083 CGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACC 313141 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| |||| || | ||| || || ||||| || |||| | || || ||||||| Sbjct 313142 AGCAAAGACTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACA 313201 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| |||| || || Sbjct 313202 ACATCCAGAAGGAGTCCACTTTGCACCTGGT 313232 >seq64 Length=816055 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || || || ||||||||| | || ||||| | Sbjct 728495 AAAATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCT 728554 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | |||||||| || ||||| | || Sbjct 728555 TCCGACACCATCGATAACG-TCAAGTCCAAGATCCAAGACAAAGAAGGAATCCCTCCTGA 728613 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||| || | |||| ||| || || || || || |||| | ||||| ||||| Sbjct 728614 CCAGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTTCAGACTA 728673 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || ||| |||| ||||| | || || | |||| || || Sbjct 728674 CAACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGAGGTGG 728724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218774944160