Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10]
66 sequences; 8,893,565 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq61 129 5e-25
seq64 104 2e-17
seq23 91.5 1e-13
>seq61
Length=567400
Score = 129 bits (142), Expect = 5e-25
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || ||||| || || ||||||| | || || ||||| |||
Sbjct 444693 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 444634
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| | || | ||| | |||| ||| || || ||||| || || |||||||
Sbjct 444633 GACACTATCGA-TAACGTCAAGTCCAAAATTCA-GGATAAGGAAGGAATCCCCCCTGACC 444576
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | |||||||| || || || ||||||| | | | ||| || ||||||||
Sbjct 444575 AGCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACA 444516
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| ||||| || ||||| || || ||||| || | || || ||||| ||
Sbjct 444515 ACATTCAGAAGGAATCTACTCTTCATTTGGTTTTGAGACTGAGAGGTGG 444467
Score = 120 bits (132), Expect = 3e-22
Identities = 169/235 (72%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || |||||||||||||| ||| | ||||| | || || || ||
Sbjct 445609 AAAAATGCAGATTTTCGTTAAGACTTTGACCGGCAAAACTATCACTTTAGAGGTAGAATC 445550
Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|||||||||||||| |||| || | || | ||| || || ||||| || || |
Sbjct 445549 TTCTGACACTATCGATAATGTCA---AATCGAAGATTCA-AGATAAGGAAGGAATCCCTC 445494
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
||||||| || | | |||||||| || || || ||||||| | | | ||| || ||
Sbjct 445493 CTGACCAGCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCG 445434
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||| ||||| ||||| || || | || || || || || | ||||| ||
Sbjct 445433 ATTACAACATTCAGAAAGAGTCTACCTTGCACTTGGTCCTGAGATTGAGAGGTGG 445379
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||||||| || ||||||| | || || ||||| |||
Sbjct 445377 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 445318
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | |||| ||| || || ||||| || || ||||||||
Sbjct 445317 GACACTATCGATAATGTCAAGTCCAAAATTCA-AGATAAGGAAGGAATCCCTCCTGACCA 445259
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | |||||||| || || || ||||||| | | | ||| || |||||||||
Sbjct 445258 GCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACAA 445199
Query 25178 TATTCAAAAAGAATCCAC 25195
|||||||| || || ||
Sbjct 445198 CATTCAAAAGGAGTCGAC 445181
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||||||| || ||||||| | || || ||||| |||
Sbjct 445149 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 445090
Query 25059 GACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| || || | |||| ||| || ||||| || || || ||||| ||
Sbjct 445089 GACACTATCGATAATGTGAAATCTAAAATTCA-GGATAAAGAGGGTATCCCGCCTGATCA 445031
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| | | ||||| || || || ||| | ||||| | | ||| || ||||||||
Sbjct 445030 ACAGAGATTGATTTTCGCTGGTAAGCAACTCGAAGACGGCAGAACTCTGTCTGATTACAA 444971
Query 25178 TATTCAAAAAGAATCCAC 25195
||||| ||||| || ||
Sbjct 444970 CATTCAGAAAGAGTCTAC 444953
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||||||| || ||||||| | || || ||||| |||
Sbjct 444921 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 444862
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | |||| ||| || || ||||| || || ||||||||
Sbjct 444861 GACACTATCGATAATGTCAAGTCCAAAATTCA-AGATAAGGAAGGAATCCCCCCTGACCA 444803
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | ||||||| || || || ||| | ||||| | | | || | ||| || ||
Sbjct 444802 GCAAAGACTTATTTTCGCTGGTAAGCAACTCGAAGACGGTAGAACGTTATCCGACTATAA 444743
Query 25178 TATTCAAAAAGAATCCAC 25195
|||||||| || || ||
Sbjct 444742 CATTCAAAAGGAGTCGAC 444725
>seq64
Length=816055
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| |||||||| || ||||||| | || || ||||| ||
Sbjct 728497 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCTTC 728556
Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| | || | ||| || ||| ||||||||||| || || |||||||
Sbjct 728557 CGACACCATCGA-TAACGTCAAGTCCAAGATCCAAGACAAAGAAGGAATCCCTCCTGACC 728615
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || || ||||| || ||| | || || | | || | || ||||
Sbjct 728616 AGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTTCAGACTACA 728675
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || |||||||| ||||| | ||||| || || || || ||||| ||
Sbjct 728676 ACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGAGGTGG 728724
>seq23
Length=343512
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
||||||||||| || || ||||| |||||||||| | ||||| |||| ||||||||
Sbjct 313021 ACAATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTCGAGGTGGAGTCT 313080
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| ||||| | ||| || ||| ||||| || || || |||||||||
Sbjct 313081 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGAC 313140
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || | | ||||| || || || || | || || | | ||| | || |||
Sbjct 313141 CAGCAAAGACTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTAC 313200
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| | || | || || || || ||||| ||
Sbjct 313201 AACATCCAGAAGGAGTCCACTTTGCACCTGGTCCTCAGACTGAGAGGTGG 313250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327651441790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |