Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq45 116 8e-21 >seq45 Length=88998 Score = 116 bits (128), Expect = 8e-21 Identities = 556/859 (65%), Gaps = 31/859 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | |||||||| ||||||||||||||| ||||||||| Sbjct 64853 TCGAAGAAGTTGGTCTTGCCTGCAAGAGAGATGTTCTCCATGAAGTCGAACGGGTTTGTG 64912 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| ||| || | || | | ||||| || |||||||||| Sbjct 64913 GCGTTGTAGTGCTTCTTGCAGCCCAGAGATAAAAGCAGCCGGTCAGCAACAAACTCCACG 64972 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | |||||| | ||||||| || | || ||| ||| | || || || Sbjct 64973 TACTGGCACATCAGGTTGCAGTTCATACCCAGCAGGTTGAC-AGGCAGGGCGTCGGTGAA 65031 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTT---CAC-CTGTGCCAGAG 251797 | || ||||||| | | || ||||| | || ||| ||| ||| | | Sbjct 65032 GTATCTCTTTTCGATCTCGACGGCCTCGGTGATGAT---CTTGAGCACGATGTCGCTG-T 65087 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGG--TGCAGACCCTC 251855 | |||| | || | ||| | || || | |||| || || ||||||||||| Sbjct 65088 TTGGGGTGTTGTTGAGGTGCGAGAAGAGCAGACAGGCAAA--GTCGGTATGCAGACCCTC 65145 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| | | ||| |||||||| || | ||| |||||||||| || | ||| |||| Sbjct 65146 GTCTCTGCAGATCAACTCGTTCGAGAAGGTCAGACCAGGCATCAGTCCTCTCTTCTTGAG 65205 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | ||| || |||||||| | | |||||| || | | ||||| Sbjct 65206 CCAGAAGATCGAGGCAAACGAGCCAGAGAAGAAAATACCCTCCACGGCAGCAAACGCAAC 65265 Query 251976 AAGGCGCTCAGCAAAC--GACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCT 252031 || | ||| |||||| | ||| | || | | || || |||||| | |||| Sbjct 65266 GAGTCTCTCGGCAAACAGGGCTTCCTCGTCGTTGATCCATCTCATG-GCCCATTCGGCCT 65324 Query 252032 TCT--TTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGC-TCGGCAT 252088 ||| || || ||||| || || || || | || || || || || || | Sbjct 65325 TCTCCTTGATAC--ATGGGATGGTCTCAATGGCGTTGAAAAG-GAACTCAGCTTCCTTAG 65381 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 ||||| || | | || | ||| || |||||| | ||||| |||||| || | | Sbjct 65382 GGTCCTTGACGTAGGTGTCGATCAGAAGCGAGTACGTTTCCGAGTGGATGTTCTCCATCA 65441 Query 252149 ACATCTGGTAAGCATAGAATAGAC-GCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTG 252207 |||||| | | ||||| | || || ||| | || || | || ||||| Sbjct 65442 TGATCTGGAACCCGTAGAA-ACACTTGGCCTCAGGAACTTGCACCTCGGCAGAGAAGTTC 65500 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTT 252266 | | | |||||| | || ||||| || | |||||||| ||||| | | || Sbjct 65501 TCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCAAAGAAGGCCAACACT-CTCGA 65559 Query 252267 GATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAG 252326 | |||| | ||| | ||||||||| ||| ||||||| | ||||| ||| Sbjct 65560 AACAAAGTATCTCTCGTTGTCGTTGAGTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAG 65619 Query 252327 AGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACAT 252385 | | ||| || | |||||||| | || | | |||||||||||||| ||| || | | Sbjct 65620 ATCGATTTCCTCTGCGGTCCAGAACGAGGCCTCTGCCTTCTTGTACATCTGCCAA-ATCT 65678 Query 252386 CAGGGTACTTGATTGGGAA 252404 | |||||||||| ||||| Sbjct 65679 CGTGGTACTTGATAGGGAA 65697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835930835506