Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq23 125 8e-24 seq61 114 1e-20 >seq23 Length=343512 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||| || || ||||| |||| ||||| | |||| || Sbjct 313232 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCG 313173 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||||||||| || |||| |||||||| | ||| | | |||||||||| | Sbjct 313172 AGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGG 313113 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || |||| ||| | | | |||||| || ||||| |||| ||||| || || Sbjct 313112 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTT 313054 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 313053 ACCGGTCAGGGTCTTGACGAAGATTTGCATT 313023 >seq61 Length=567400 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||||| ||||| || ||| || ||||| |||||||| | Sbjct 445378 ACCACCTCTCAATCTCAGGACCAAGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCGGA 445437 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| ||||||||||||||||| || ||||||| |||||||| | || Sbjct 445438 CAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGG 445497 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| | || | ||||| | | | ||||| ||||| | Sbjct 445498 GATTCCTTCCTTAT-CTTGAATCTTCGATTTGACATTATCGATAGTGTCAGAAGATTCTA 445556 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | ||||| |||||||| || | ||||| || || || |||||||| Sbjct 445557 CCTCTAAAGTGATAGTTTTGCCGGTCAAAGTCTTAACGAAAATCTGCATTTT 445608 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| |||| ||||| || |||||||||||| |||||||| | Sbjct 445150 ACCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGA 445209 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| ||||||||||||||||| || ||||||| |||||||| | || Sbjct 445210 CAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGG 445269 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||| | |||| | | | ||||| || || | Sbjct 445270 GATTCCTTCCTTAT-CTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAA 445328 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || | || || || || |||||||| Sbjct 445329 CCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445377 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 41964 TATATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTT 42023 || ||| ||||| | ||| ||||| | | ||| |||||||| | || ||||| Sbjct 444449 TACATACTAATTCAGAAACCACCTCTCAGTCTCAAAACCAAATGAAGAGTAGATTCCTTC 444508 Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 ||||| |||||||| | |||||| | |||| ||||||||||||||||| || |||||| Sbjct 444509 TGAATGTTGTAATCGGACAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGT 444568 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCAC 42142 | |||||||| | || | | ||||| ||| ||| |||| | |||| | | | Sbjct 444569 CTTTGCTGGTCAGGGGGGATTCCTTCCTTATCC-TGAATTTTGGACTTGACGTTATCGAT 444627 Query 42143 CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 ||||| || || || || | |||||||| || || || | || || || || || Sbjct 444628 AGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAAT 444687 Query 42203 TTGCAT 42208 |||||| Sbjct 444688 TTGCAT 444693 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || |||| ||||| || ||| || ||||| |||||||||| Sbjct 444922 ACCACCTCTCAATCTCAGGACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGA 444981 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| || || |||||||||||||| || | || ||| || || | || Sbjct 444982 CAGAGTTCTGCCGTCTTCGAGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGG 445041 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || ||| ||| |||| | ||| | | | | ||||| || || | Sbjct 445042 GATACCCTCTTTATCC-TGAATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCAA 445100 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || | || || || || |||||||| Sbjct 445101 CCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| |||| |||||| || |||||||||||| || || || | Sbjct 444694 ACCACCTCTCAATCTCAAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGA 444753 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | |||| || || |||||||||||||| || |||| |||||||| | || Sbjct 444754 TAACGTTCTACCGTCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGG 444813 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||| | |||| | | | ||||| || || | Sbjct 444814 GATTCCTTCCTTAT-CTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAA 444872 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || | || || || || |||||||| Sbjct 444873 CCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 444921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212351849440