Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq61 127 4e-24 seq64 107 4e-18 >seq61 Length=567400 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | || | || || |||| |||||| || || |||||| Sbjct 444920 ATACCACCTCTCAATCTCAGGACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCA 444979 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || || | ||| |||||||| || || ||||||||||||||||| Sbjct 444980 GACAGAGTTCTGCCGTCTTCGAGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGC 445039 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || |||||| ||| |||||| |||| || || || || Sbjct 445040 GGGATACCCTCTTTATCCTGAATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCA 445099 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || ||||||| || || ||||| Sbjct 445100 ACCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445149 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | || || || || |||| |||||| || || ||||| Sbjct 445376 ATACCACCTCTCAATCTCAGGACCAAGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCG 445435 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || || | || ||||||||||| || | ||| || || ||||| Sbjct 445436 GACAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGA 445495 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || ||| |||||| |||| || || |||||| Sbjct 445496 GGGATTCCTTCCTTATCTTGAATCTTCGATTTGACATTATCGATAGTGTCAGAAGATTCT 445555 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| ||| || ||||| || || || || |||| || ||||||||||| Sbjct 445556 ACCTCTAAAGTGATAGTTTTGCCGGTCAAAGTCTTAACGAAAATCTGCATTTT 445608 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | || || | ||| || || | || |||| || || ||||| || Sbjct 444692 ATACCACCTCTCAATCTCAAAACCAGATGCAAGGTCGACTCCTTTTGA-ATGTTATAGTC 444750 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| |||| | || || | ||| |||||||| || || | ||| || || ||||| Sbjct 444751 GGATAACGTTCTACCGTCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGG 444810 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| |||||||| ||||| || |||||| |||| || || || || Sbjct 444811 GGGGATTCCTTCCTTATCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTC 444870 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || ||||||| || || ||||| Sbjct 444871 AACCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 444921 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| || | || || ||||| | ||||| || || || || ||||| || Sbjct 444466 ACCACCTCTCAGTCTCAAAACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCGGA 444525 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | || || | || ||||||||||| || | ||| || || ||||| || Sbjct 444526 CAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGGGG 444585 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || ||||| || || ||| |||| || || || || || Sbjct 444586 GATTCCTTCCTTATCCTGAATTTTGGACTTGACGTTATCGATAGTGTCAGAGGACTCAAC 444645 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || ||||||| || || ||||| Sbjct 444646 CTCAAGGGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 444693 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | || || | || || || | || |||| || || || ||||| Sbjct 445148 ATACCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGA-ATGTTGTAATC 445206 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | || || | || ||||||||||| || | ||| || || ||||| Sbjct 445207 GGACAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGG 445266 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| |||||||| ||||| || |||||| |||| || || || || Sbjct 445267 AGGGATTCCTTCCTTATCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTC 445326 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || ||||||| || || ||||| Sbjct 445327 AACCTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445377 >seq64 Length=816055 Score = 107 bits (118), Expect = 4e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||||||||| || | | || ||||| ||||| | |||||| ||| || || Sbjct 728731 AATGATACCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTA 728672 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || || | |||| | || || | ||| ||||| || ||||| ||||| || || || Sbjct 728671 GTCTGAAAGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTC 728612 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || ||||||||||| ||||| || || || || ||| || | || || || Sbjct 728611 AGGAGGGATTCCTTCTTTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGA 728552 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | || ||||| || || || || || || | || ||||||||||| Sbjct 728551 CTCGACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 728495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479167499100