Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq45 96.9 1e-14 seq43 91.5 4e-13 seq65 89.7 2e-12 >seq45 Length=88998 Score = 96.9 bits (106), Expect = 1e-14 Identities = 387/595 (65%), Gaps = 17/595 (3%) Strand=Plus/Minus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGCA 133131 |||||||| ||||||| || ||| || ||||||||||||||||||| || || ||| | Sbjct 65709 AGGTTTGTCTTGTTCCCTATCAAGTACCACGAGATTTGGCAGATGTACAAGAAGGCAG-A 65651 Query 133132 AGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC 133191 | | || ||||| || ||| | ||| | ||||| |||| | ||||| | Sbjct 65650 GGCCTCGTTCTGGACCGCAGAGGAAATCGATCTGTCCAAGGACCTGCACGACTGGAACAA 65591 Query 133192 C---CTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAG 133248 | || | | | || | | | ||| |||| | | || || || |||||||| Sbjct 65590 CAGACTCAACGACAACGAGAGATACTTTGTTTCGAGAGTGTTGGCCTTCTTTGCTGCTTC 65531 Query 133249 TGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 || || ||||| || || || | || || | | || || || ||| | | Sbjct 65530 GGACGGCATTGTCAACGAGAACTTGGTCGAGAACT-TCTCTGCC-GAGGTGCAAGTTCCT 65473 Query 133307 GAAGCCC-GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATA 133365 || ||| ||| || || ||| | ||||| |||||| || ||||| || || || Sbjct 65472 GAGGCCAAGTGT-TTCTACGGGTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTA 65414 Query 133366 TTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA--CTATTCAAC 133423 || ||| || || || ||| |||| || || | ||||| | || |||||| Sbjct 65413 CTCGCTTCTGATCGACACCTACGTCAAGGA--CCCTAAGGAAGCTGAGTTCCTTTTCAAC 65356 Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || | || ||||| || |||| | || ||||| || | ||||||| | Sbjct 65355 GCCATT-GAGACCATCCCATGTATCAAGGAGAAGGCCGAATGGGCCATGAGATGGATCAA 65297 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||| || || ||||| | |||||||| ||||||| || ||||| ||||| Sbjct 65296 CGACGAGGAAGCCCTGTTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTT 65237 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||| ||| |||| ||| || || ||||| || ||| | || | | ||||| || Sbjct 65236 CTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCT 65177 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || ||||| | || | || ||||||| || || ||||| |||||| Sbjct 65176 GACCTTCTCGAACGAGTTGATCTGCAGAGACGAGGGTCTGCATACCGACTTTGCC 65122 >seq43 Length=143179 Score = 91.5 bits (100), Expect = 4e-13 Identities = 322/498 (65%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || |||||| || | ||||||||| || || || || Sbjct 19910 CTATCAAATCTGCCGGGTCTGGTCAATGCTTTATCCAGTATATCGGCCCTATTCGTACCT 19969 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | || ||||| || || | || |||||||||||| ||| | ||||| Sbjct 19970 GCAAGAACCACAATGTGATCAGTATCCTCAAATCCATCCATTTCGACTAAGAGCTGATTC 20029 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | |||| ||| |||| || || | ||| ||| ||| | || ||| ||| Sbjct 20030 AATGTTGCTTCTTTTTCGTCGTTCGCACCCATTGGTCCAC-----TTTCT-CTTGACTTA 20083 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| || || || | || || | ||| |||| | ||| || | | | Sbjct 20084 CCAATGGCATCGATCTCATCCACAAATATGATACAAGGAGCTAGCTTTCTGGCTGTAGAA 20143 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || | || | || || || | |||||| ||||| || || ||||| ||| | Sbjct 20144 AACAAATCGCGAACTCTAGAAGCACCGACACCAACGTACATCTCGACGAATTCGGAACCA 20203 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || |||| ||| || || || ||| || | || | | || ||| Sbjct 20204 GAAACAGAAAGAAATGGCACACCAGCCTCTCCCGCTGTGGCTTTAGCTAACAAGGTTTTA 20263 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 ||||| || || || | || | |||| | || ||||| | ||| || |||| | Sbjct 20264 CCTGTACCTGGGGGGC---CTGAAAGAATGGCGCCTTTTGGAATTTTGGCACCCAAC-TT 20319 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||||||| ||| |||||||||| |||| |||| || ||| | || || || Sbjct 20320 CTCGTATTTCTTAGGCTCCTTTAAAAATGTGACAAATTCCATAATTTCCTCCTTAGCTTC 20379 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 20380 ATCACAACCGGCAACATC 20397 >seq65 Length=94251 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACA 155647 || ||||||| |||||| || || ||||| || | | ||| || ||||| || || Sbjct 84373 ATCGACGCCAAATTACACACGGCCACCTCCTCTGGAGATGA-GTACTCGACAATTTCGCA 84315 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||||| ||||| ||||||| | || | ||||||||||| | || ||| || || Sbjct 84314 GCACAAATTAGACGACTTGATGATACCAAGGTTCTTCTGGTTGGTCTTGGAGTTGCAGGC 84255 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| |||| || ||||| ||| |||| || |||| ||| Sbjct 84254 GTCCTTGTACAGCATGAATGGCGTGCCTGTTTCCGTCTGGGCCTCCAAAAT 84204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816355394242