Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq56 95.1 3e-14 seq52 93.3 1e-13 >seq56 Length=227031 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || ||||| ||| ||||||| | ||||| || ||||||||||||| Sbjct 31071 CATTTGATGGATGATGATCCCGTTTTGTTCAACCGTCAACCGTCTTTGCATAAAATGTCC 31130 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG 305426 ||||||||||||| ||| || || | || | || ||| || | || ||| ||| Sbjct 31131 ATGATGGCTCATAGAGTGAAGGTCATGCCTTACTCCACGTTTAGAATGAATTTGTCTGTG 31190 Query 305427 -CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | |||||||||| || ||||| ||||| || || |||||| ||||||| || || Sbjct 31191 ACCT---CGCCTTATAACGCCGATTTCGATGGTGACGAGATGAATCTGCATGTTCCGCAG 31247 Query 305486 TC 305487 || Sbjct 31248 TC 31249 >seq52 Length=883241 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 110677 CAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAG 110736 |||| |||||||| || ||| | |||||| ||| ||| ||||| || ||| |||||| Sbjct 649962 CAAC-GGACTTGTGCCTATGATTCAAGTCTTTAACAGCACCGCAAAGTACGTGGATCAAG 650020 Query 110737 GTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATAT 110793 |||| ||| ||| ||| | ||| || ||| | || || |||||| |||| | | Sbjct 650021 GTGGAAATAAAAGACCAGGCGCTTTTTGCATGTATTTAGAGCCGTGGCATGCAGACGTGT 650080 Query 110794 TTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTAT 110853 |||| ||| | || | | ||||| || ||| |||||| | || | ||||||| Sbjct 650081 TTGAGTTCCTGGACTTGAGGAAAAACCATGGAAAGGAAGAAACTCGCGCTAGAGATTTAT 650140 Query 110854 TTTATGCAATGTGGATTTCAGATTTATTCATG 110885 ||||||| | ||||| ||||||| || ||| Sbjct 650141 TTTATGCTCTTTGGATACCAGATTTGTTTATG 650172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/269 (71%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 113178 GAAGTGAAAAACTCCATTATTGCTAATC-AAGGTTCGGTTCAA--CATCTAAA--ATTGC 113232 ||| |||||||| ||| || | ||| |||| || || ||| |||| ||| ||| | Sbjct 651124 GAAATGAAAAACGAAATTGTT-CGAATGGAAGGATCCGTCCAAGCCATCGAAAGCATT-C 651181 Query 113233 CTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTG 113292 ||| | | || || ||| ||| || ||||||||||| ||||||| | | || | Sbjct 651182 CTGCCGACATCAAGGAAATATATAAAACGGTTTGGGAAATTCAGCAACGAGCACTTATAG 651241 Query 113293 ATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGC 113352 ||||||||||||| |||| ||| || || || || ||| |||||| |||| ||| Sbjct 651242 ATATGGCTGCAGACCGTGCTCCGTTCATTGACCAGTCCCAGAGCATGAACCTATTCATG- 651300 Query 113353 CGGACACCTCACCAGAT--AAGGTGA-CATC-TGCTCTATTTTACGGCTGGAAAAAAGGT 113408 |||| | | |||| | || ||| || | ||| | ||||| | ||||| | ||| Sbjct 651301 CGGA-ATCCGACCATGTCCAAACTGACCAGCATGCAC--TTTTATGCATGGAAGAGAGGG 651357 Query 113409 TTAAAAACAGGTATGTATTATTTGCGAAC 113437 || |||||||| || |||||||||||||| Sbjct 651358 TTGAAAACAGGCATCTATTATTTGCGAAC 651386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811796401426