Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq61 134 9e-27 seq64 96.9 2e-15 >seq61 Length=567400 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || ||||| || || ||||| ||| | Sbjct 445149 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 445090 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | ||| | |||| || || ||||| ||| | ||||| ||||| Sbjct 445089 GACACTATCGATAATGTGAAATCTAAAA-TTCAGGATAAAGAGGGTATCCCGCCTGATCA 445031 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || || || ||||| ||||||| | ||| | |||||||| Sbjct 445030 ACAGAGATTGATTTTCGCTGGTAAGCAACTCGAAGACGGCAGAACTCTGTCTGATTACAA 444971 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| || || || | || | || ||| |||| || Sbjct 444970 CATTCAGAAAGAGTCTACCTTGCACCTGGTCCTGAGATTGAGAGGTGG 444923 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || ||||| || || ||||| ||| | Sbjct 444921 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 444862 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | |||||| || || ||||| | || || || || Sbjct 444861 GACACTATCGATAATGTCAAGTC-CAAAATTCAAGATAAGGAAGGAATCCCCCCTGACCA 444803 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || || || || ||||| ||||||| | || ||| ||| || || Sbjct 444802 GCAAAGACTTATTTTCGCTGGTAAGCAACTCGAAGACGGTAGAACGTTATCCGACTATAA 444743 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || || ||| | ||||| || ||| |||| || Sbjct 444742 CATTCAAAAGGAGTCGACCTTGCATCTGGTTTTGAGATTGAGAGGTGG 444695 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || ||||| || || ||||| ||| | Sbjct 445377 ATGCAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 445318 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | |||| || || || ||||| | || || || || Sbjct 445317 GACACTATCGATAATGTCAAGTCCAAAA-TTCAAGATAAGGAAGGAATCCCTCCTGACCA 445259 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || || || ||||||| | ||| | ||||||||| Sbjct 445258 GCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACAA 445199 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || || || | ||||| || ||| |||| || Sbjct 445198 CATTCAAAAGGAGTCGACCTTGCACCTGGTTTTGAGATTGAGAGGTGG 445151 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || ||||| || || ||||| ||| | Sbjct 444693 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCT 444634 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || |||||| || || ||||| | || || || || Sbjct 444633 GACACTATCGATAACGTCAAGTCCAAAATTCAGGATAAGGAAGGAATCCCCCCTGACCAG 444574 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || || ||||||| | ||| | |||||||||| Sbjct 444573 CAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACAAC 444514 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||||| ||||| || || |||| || Sbjct 444513 ATTCAGAAGGAATCTACTCTTCATTTGGTTTTGAGACTGAGAGGTGG 444467 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||| || | || || ||||| |||||| | || || || || Sbjct 445608 AAAATGCAGATTTTCGTTAAGACTTTGACCGGCAAAACTATCACTTTAGAGGTAGAATCT 445549 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | || ||| | ||| | || | || || || ||||| | || || || Sbjct 445548 TCTGACACTATCGATAATGTCAAATCGAAGA-TTCAAGATAAGGAAGGAATCCCTCCTGA 445490 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || | | || ||||| || || || || ||||||| | ||| | |||||| Sbjct 445489 CCAGCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTA 445430 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || |||||||| || || || || || | || ||| |||| || Sbjct 445429 CAACATTCAGAAAGAGTCTACCTTGCACTTGGTCCTGAGATTGAGAGGTGG 445379 >seq64 Length=816055 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||| | || ||||| || ||||| | || || || || Sbjct 728495 AAAATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCT 728554 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||||||||| | || || || Sbjct 728555 TCCGACACCATCGATAACGTCAAGTCCAAGATCCAAGACAAAGAAGGAATCCCTCCTGAC 728614 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || || ||||| || ||||| || |||| | || | || ||| Sbjct 728615 CAGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTTCAGACTAC 728674 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 ||||| |||||||||||||| || ||||| ||| | || || |||| || |||| Sbjct 728675 AACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGAGGTGGTATCA 728729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009328113528