Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F000787595.1_202014-10-10] 66 sequences; 8,893,565 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23 114 1e-20 seq64 89.7 5e-13 seq61 87.8 2e-12 >seq23 Length=343512 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| ||| ||||||||| ||||| ||||| || || || | |||| ||| Sbjct 313232 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCG 313173 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| ||||| | || ||||| | || | | |||||||||| | Sbjct 313172 AGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGG 313113 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | | |||||| ||||||||||| | || || || || Sbjct 313112 ATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTT 313054 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| ||||| ||||| || ||||| Sbjct 313053 ACCGGTCAGGGTCTTGACGAAGATTTGCAT 313024 >seq64 Length=816055 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| || || ||||| ||||| || ||||| | |||| ||| Sbjct 728706 ACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAAAGGGTTCTGCCGTCCTCG 728647 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| |||| | || ||||| | || | | || ||||| | Sbjct 728646 AGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGGATTCCTTCTTTGTCTTGG 728587 Query 41774 ATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 || || ||| | | | ||| | |||||| ||||| ||||||| || || | Sbjct 728586 ATCTTGGACTTGACGTTATCGATG-----GTGTCGGAAGACTCGACCTCCAAGGTGATGG 728532 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || |||| ||||| |||||||||||||| || Sbjct 728531 TCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 728495 >seq61 Length=567400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||||||||| || |||||| ||||||||||||||||| | || | |||| Sbjct 444710 AAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGATAACGTTCTACCGTCT 444769 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||| ||||| || ||||| || || | || ||||| | ||| | | ||||| | | Sbjct 444770 TCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGGATTCCTTCCTTAT-C 444828 Query 41771 ATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 ||| |||| | ||| || || | |||||| ||||| ||||| | || || Sbjct 444829 TTGAATTTTGGACTTGACATTATCG--ATAGTGTCAGAGGACTCAACCTCAAGGGTGATG 444886 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| || || |||||||| ||||| Sbjct 444887 GTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 444921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| || ||| ||||||||||| || || || || || | |||| ||| Sbjct 444941 ACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGACAGAGTTCTGCCGTCTTCG 445000 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA-ACGCTCTCCTTGTCCA 41771 || ||||| || ||||| |||| | |||||| || |||||| || |||| || ||| Sbjct 445001 AGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGGGATACCCTCT--TTATCC- 445057 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| |||| | || || | | |||||| ||||| ||||| | || || || Sbjct 445058 TGAATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTC 445117 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| || || |||||||| ||||| Sbjct 445118 TTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303618599200