Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq4 181 1e-40 seq3 104 3e-17 >seq2 Length=1516309 Score = 196 bits (216), Expect = 6e-45 Identities = 443/663 (67%), Gaps = 6/663 (1%) Strand=Plus/Plus Query 54004 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 || || |||||| ||| | || |||| | ||| || || || |||||||| || || Sbjct 917306 CAGCGTCCACTCAGCGTTCTGCTCGACTCTCTCCATGAACAGGTCTGGAATCCACAGCGC 917365 Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 || || ||||||| ||| ||||| || || ||||| | |||| || Sbjct 917366 AGGGAACAGGTCTCTGGCTCTGATCTCCTCCTTACCATGGTTCTTCCGGATGTCGATAAA 917425 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | |||||| || ||||| || || | ||| | | | | |||||||| ||||| Sbjct 917426 GTCAAAAATATCCGAGTGCCATGGCTCAACGTACAGAGCAAACGCGCCAGGCCGCTTGTT 917485 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||||| || | |||||| |||||||| || | ||||||| ||||||||| || || Sbjct 917486 GCCTCCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGATGCC 917545 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||||| | || ||||| || | ||| || || ||| | ||| || ||| Sbjct 917546 GTTGGACGTGCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAATGTG 917605 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 ||||| || || || || || ||||| | || || || | || |||||||| Sbjct 917606 CAGACCAATGCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATAGAT 917665 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 ||| || || || ||| ||||| || | |||||| |||||| || || || Sbjct 917666 GCCGTCGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATGAGG 917725 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || |||||||| | || || || ||||| || || |||||| || | || || Sbjct 917726 AGTACCGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAGGTT 917785 Query 54484 GTACGTCTCGAT--AGCTGAGTCTAT-ATCCCATTGATGAATTCCTACTGCGACACGCAT 54540 |||||||||||| |||| | | | ||| | ||| || || | || |||||||| Sbjct 917786 GTACGTCTCGATGACGCTGGGAATGTCATCGC---CATGGATACCAATGGCCACACGCAT 917842 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 | ||||||||| ||||| || ||| || | || |||| | || || || Sbjct 917843 GACCATGTGCTGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACCGCTC 917902 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 || || || || |||||||||||||| |||||||||| ||||| | || | ||||| Sbjct 917903 CAGCGTCTTGAAGCCAAAATAGTTGTACGAAAAGTCTCTATCGTACACTATGGCAGAGTT 917962 Query 54661 GAG 54663 || Sbjct 917963 CAG 917965 >seq4 Length=1302532 Score = 181 bits (200), Expect = 1e-40 Identities = 413/611 (68%), Gaps = 18/611 (3%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || ||| || |||||||||||||| | || || ||||| || || || Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || || ||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT-----G 24305 |||||| || || || || ||||| |||| ||||| || || ||| || ||| | Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCA-AACAGG-GCTTCCTCG 920246 Query 24306 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 || | ||||| || || ||||| |||||||||| || | ||| || || ||||| || Sbjct 920247 TCGTTGATCCATCTCATG-GCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAAT 920305 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 || || || || | | ||| ||| || || || || || || |||| ||| Sbjct 920306 GGCGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGA 920365 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||| ||||||| || ||||| || || || || || ||||||||||| | ||||| Sbjct 920366 GTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTC 920425 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCA 24542 | || || || || | | || ||||| | || || || || || || ||||| Sbjct 920426 AGGAACTTGCACCTCGGCAGAGAA--GTTCTCGACCAAGTTCTCGTTGACAATGCCGTCC 920483 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT-- 24599 || ||||| || ||||| || | ||| ||| | |||| || ||| ||| Sbjct 920484 GAAGCAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGT-TGTCGTTGAGTCT 920542 Query 24600 -TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 || ||||| || | | || || || | ||| | ||| || | ||||| || || || Sbjct 920543 GTTGTTCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGC 920602 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 ||||||||| || ||||| | ||| || || || || | || || || | ||||| || Sbjct 920603 CTCTGCCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCT 920662 Query 24719 ATTTGGATTTT 24729 || ||||| Sbjct 920663 TCTTTTATTTT 920673 >seq3 Length=1363476 Score = 104 bits (114), Expect = 3e-17 Identities = 597/933 (64%), Gaps = 38/933 (4%) Strand=Plus/Minus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTAT 53760 ||| | ||| | ||||| || || ||| ||||||||| || | ||||| | || Sbjct 659395 TGCCAAAGAGCCTAGATTGCAGACTGCTGTTTCCTCATTAG-AT--GAATATTCAACGAT 659339 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||| || ||||| |||||||||| || |||||||| || ||| |||||| || Sbjct 659338 TTCACAACAGAGATTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTTATT 659279 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || || || || || || | ||| || || || ||||| |||| || ||| ||||| Sbjct 659278 GCAGGCGTCTTTGTAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTATCGC 659219 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAGT 53938 | ||| | | || || | | || | || | || | ||| || | | Sbjct 659218 ATGCCACAGTTTCTGGGCTTTCACTTTACGGATATAGCGACCCTCACGTTCATACCTGTT 659159 Query 53939 GTATACAATCGTT-CAAACTCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCATC 53994 ||| || | | |||| || ||||| || |||| | ||||||| ||| ||| Sbjct 659158 GTA---AAGCTTGACAAATTCATCTCCATAAG---TGTCACTGAGTCCAGGAGATTGATC 659105 Query 53995 C--GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | ||| | | | |||||||| || | || ||| | |||||| | ||| || Sbjct 659104 CTCGGAAAAA--AGGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGGT 659047 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC-TGTATTCTTTTT 54111 ||||||||||| ||||| |||||| | | | ||| || ||||| || || | | Sbjct 659046 ATCCAAAGAGCATAAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCCTC 658987 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 ||| || |||||| | | | || | ||||||||| || || || ||| | | | || Sbjct 658986 AAG-TCCAGGAACTCAAACACGTCTGCATGCCACGGCTCTAAATACATGCAAAAAGCGCC 658928 Query 54172 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 54231 || | ||| ||||| || ||||| | ||| | |||||| | ||| | ||| | ||| Sbjct 658927 TGGTCTTTTATTTCCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAATCAT 658868 Query 54232 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 || | || || ||||||| |||||| || || || || || || || || || Sbjct 658867 AGGCACAAGTCCGTTGGATGTACCATTAGTTCCAGAAATGTAAGAGCCGGCAGCTCGGAT 658808 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 || || || || || || || ||| |||||| || | ||| | | | | || Sbjct 658807 GTTTGAAACGTGTATGCCAATTCCGCCAGCCGCTTTAGAAATCAGGGCGGA-CTTGTGAA 658749 Query 54352 -CGTATCATAGATGCCCTCTATACTATCATCCAT-CATGTTAAGTAGAAAACAG--CTAG 54407 ||| | ||||| | |||| || |||| ||| ||| ||||||||| | Sbjct 658748 TCGTTCTGAAAATGCCATTTATAGAGTC-CCCATCCATTGCAAGAAGAAAACAGGAGGAT 658690 Query 54408 ACATTTGGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 | ||| || || | || || || || || | ||||| ||||| || | || || Sbjct 658689 AAATTAGG---CGTTTCGGTACCGGCGTTGAACAGCGTAGGCGAAGCATGGATGAAGTAT 658633 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 ||||| || | || |||| || |||| | | |||||||| | || || || || Sbjct 658632 TTTTCGGACATAAGTCTGTATGTTTCGAGAACGCGGTCTATATTACCTTTGTGTATCCCA 658573 Query 54527 ACTGCGACACGCATTAACATGTGCTGAG--GTCTTTCAACGATCTTGTTGTTTATTTTCA 54584 | || || | ||| |||| | ||||| |||| ||| | |||| | ||||| | Sbjct 658572 ATGGCCACTCTCATAAACAAATACTGAGGAGTCTCGCAA-GGTCTT-CCATCCATTTTTA 658515 Query 54585 GCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617 |||| || ||| |||||| ||| | ||||||| Sbjct 658514 GCAAATATGATCTTTCCATTGTTCTGAAACCAA 658482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721548049360