Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 361 6e-95 seq7 116 4e-21 seq2 107 2e-18 >seq4 Length=1302532 Score = 361 bits (400), Expect = 6e-95 Identities = 592/845 (70%), Gaps = 20/845 (2%) Strand=Plus/Minus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||| || | ||||| || | |||| || || |||| |||||||| ||||| |||| Sbjct 920661 GGTTTGTCTTGTTCCCTATCAAGTACCACGAGATTTGGCAGATGTACAAGAAGGCAGAGG 920602 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | ||||||||||||| ||||| | || |||||||||||| | ||||||| | | Sbjct 920601 CCTCGTTCTGGACCGCAGAGGAAATCGATCTGTCCAAGGACCTGCACGACTGGAACAACA 920542 Query 116724 ---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 | |||||||||||| | | || | | ||| ||||||| || || || | Sbjct 920541 GACTCAACGACAACGAGAGATACTTTGTTTCGAGAGTGTTGGCCTTCTTTGCTGCTTCGG 920482 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 ||||||| ||||||||||| |||||||| ||| || |||||||| || | |||| Sbjct 920481 ACGGCATTGTCAACGAGAACTTGGTCGAGAACTTCTCTGCCGAGGTGCAAGTTCCTGAGG 920422 Query 116841 CGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 | ||| |||||||| || |||||| ||||||||| | |||||||||| ||| ||| Sbjct 920421 CCAAGTGTTTCTACGGGTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGC 920362 Query 116901 CCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCA 116957 || |||||||| ||||| | | || ||| | || ||| ||| ||||||| Sbjct 920361 TTCTGATCGACACCTACGTCAAGGACCCTAAGGAAGCTGAGTTCCTTTTC---AACGCCA 920305 Query 116958 TCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA 117017 | ||||| || || || |||| ||||||||||| ||||| || | |||||| || | Sbjct 920304 TTGAGACCATCCCATGTATCAAGGAGAAGGCCGAATGGGCCATGAGATGGATCAACGACG 920245 Query 117018 GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT 117077 || ||| || | |||| | || || || || || ||||| ||||| | ||||| | Sbjct 920244 AGGAAGCCCTGTTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTTCTTCT 920185 Query 117078 CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTT 117137 | ||| || ||| | || || ||||||||||| | || || ||||| || ||||| | Sbjct 920184 CTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCTGACCT 920125 Query 117138 TCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 || |||||| | |||| ||| ||||||||||||||| ||||||||||||| |||| | Sbjct 920124 TCTCGAACGAGTTGATCTGCAGAGACGAGGGTCTGCATACCGACTTTGCCTGTCTGCTCT 920065 Query 117198 TCAAGCATTTGGTGCAGCGACC----GAGCG-CGGCGCGCGTCAGGGAGATCGTCACCGA 117252 || ||| | || | || |||| | || || ||| ||||| ||||||| Sbjct 920064 TCTCGCACCT-CAACAACACCCCAAACAGCGACATCGTGC-TCA---AGATCATCACCGA 920010 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 || |||| ||||| || | | | ||||||| || ||||| || |||||||| | Sbjct 920009 GGCCGTCGAGATCGAAAAGAGATACTTCACCGACGCCCTGCCTGTCAACCTGCTGGGTAT 919950 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || ||| | ||||| || ||| | ||||| || || ||| ||||||| | || Sbjct 919949 GAACTGCAACCTGATGTGCCAGTACGTGGAGTTTGTTGCTGACCGGCTGCTTTTATCTCT 919890 Query 117373 GGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CT 117431 || | || |||||||||||| | | |||||| | ||||| ||| | |||||| || Sbjct 919889 GGGCTGCAAGAAGCACTACAACGCCACAAACCCGTTCGACTTCATGGAGAACATCTCTCT 919830 Query 117432 TGGAG 117436 || || Sbjct 919829 TGCAG 919825 >seq7 Length=988507 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || || |||||| |||| || || | | Sbjct 50304 AATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 50245 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| ||||| || || | ||||| ||||| ||||| | |||| Sbjct 50244 CGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACC 50186 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| |||| || | ||| || || ||||| || |||| | || || ||||||| Sbjct 50185 AGCAAAGACTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACA 50126 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| |||| || || Sbjct 50125 ACATCCAGAAGGAGTCCACTTTGCACCTGGT 50095 >seq2 Length=1516309 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || || || ||||||||| | || ||||| | Sbjct 177566 AAAATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCT 177507 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | |||||||| || ||||| | || Sbjct 177506 TCCGACACCATCGATAACG-TCAAGTCCAAGATCCAAGACAAAGAAGGAATCCCTCCTGA 177448 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||| || | |||| ||| || || || || || |||| | ||||| ||||| Sbjct 177447 CCAGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTTCAGACTA 177388 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || ||| |||| ||||| | || || | |||| || || Sbjct 177387 CAACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGAGGTGG 177337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219154918320