Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 116 6e-21 seq1 116 6e-21 seq7 86.0 9e-12 >seq2 Length=1516309 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | |||||||| ||||| || ||||| || || || |||||| Sbjct 177337 CCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAA 177396 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || || | ||| || || || || |||||||||||||| || ||||| Sbjct 177397 AGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGG 177456 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 177457 ATTCCTTCTTTGTCTTG 177473 >seq1 Length=1541475 Score = 116 bits (128), Expect = 6e-21 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || || ||||| ||||| || || ||||| || Sbjct 445976 CCACCTCTCAATCTCAGGACCAAGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCGGAC 446035 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || |||| || || ||||||||||| | ||||||||| || ||||| Sbjct 446036 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGG 446095 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||| || ||| |||||| Sbjct 446096 ATTCCTTCCTTATCTTGAATCTTCGATTTGACATTATCGATAGTGTCAGAAGATTCTACC 446155 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| ||||| ||||| || || || || |||| ||| || |||||||| Sbjct 446156 TCTAAAGTGATAGTTTTGCCGGTCAAAGTCTTAACGAAAATCTGCATTTT 446205 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| || |||||||| | ||||||||| || || || ||||| || Sbjct 445064 CCACCTCTCAGTCTCAAAACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCGGAC 445123 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || |||| || || ||||||||||| | ||||||||| || || || Sbjct 445124 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGGGGG 445183 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 445184 ATTCCTTCCTTATCCTG 445200 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || |||| || || || || || ||| || || || ||||| || Sbjct 445748 CCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGA-ATGTTGTAATCGGA 445806 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | || |||| || || ||||||||||| | ||||||||| || ||||| Sbjct 445807 CAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGG 445866 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 445867 GATTCCTTCCTTATCTTG 445884 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | |||| || || ||||| ||||| || || ||||| || Sbjct 445520 CCACCTCTCAATCTCAGGACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGAC 445579 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || || | ||| || ||||| ||||||||||| || ||||| || || Sbjct 445580 AGAGTTCTGCCGTCTTCGAGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGGG 445639 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 445640 ATACCCTCTTTATCCTG 445656 >seq7 Length=988507 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | |||| || ||||| || || || || || || || ||| Sbjct 50077 CCACCTCTCAGTCTGAGGACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 50136 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || || | || || ||||| ||||||| ||||||||| || || || Sbjct 50137 AGAGTTCTGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGG 50196 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || || || || Sbjct 50197 ATTCCCTCCTTGTCCTG 50213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526334941440