Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 116 8e-21 seq3 114 3e-20 >seq2 Length=1516309 Score = 116 bits (128), Expect = 8e-21 Identities = 824/1304 (63%), Gaps = 45/1304 (3%) Strand=Plus/Minus Query 248827 TTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAA 248886 |||| ||||| ||||||||| || |||||| | || |||||||| || ||| || Sbjct 917920 TTTGGCTTCAAGACGCTGGAGCGGTCATATCTCTTGAAGATTGATGGAAAAGTCGCCGAG 917861 Query 248887 CGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC 248946 || ||||||||| | ||||| ||||| | || || || |||||||| ||| Sbjct 917860 AGACCCCAGCACATGGTCATGCGTGTGGCCATTGGTATCCATGGCGATGACATTCCCAGC 917801 Query 248947 GTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTC 249006 || |||||||||||| | ||| || | | || || || | || || || Sbjct 917800 GTCATCGAGACGTACAACCTGATGTCGCAAAAATTCTTCACCCACGCGTCGCCAACTCTG 917741 Query 249007 TTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTT-CTTGCCATGCAAG 249064 || || |||||||| | ||| | ||| || || || |||||| |||||||| | | Sbjct 917740 TTTAATGCCGGTACTCCTCATC-CGCAGATGTCTTCCTG-TTTCTTGGTTGCCATGAAGG 917683 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAAT 249121 ||||||| |||||||||| |||||||| || | |||| || ||| || || Sbjct 917682 ACGACTCCATCGACGGCATCTATGACACCCTCA---AGACCTGTGCTCTGATCTCCAAGG 917626 Query 249122 TCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAG 249181 || || || || ||||| | | |||||| || | | || || |||||| | Sbjct 917625 CTGCTGGAGGCATTGGTCTGCACATTCACAACATTAGATCCACCGGGTCTTACATCGCTG 917566 Query 249182 GTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGC 249239 | || || || ||| | || ||| | || | | || || | |||||| Sbjct 917565 GAACCAACGGCACGTC--CAACGGCATCATTCCAATGGTGAGAGTGTTCAACAACACCGC 917508 Query 249240 CAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGT 249296 ||| | | || |||||| || | || || |||| || |||| | || Sbjct 917507 CAGATACGTCGACCAGGGAGGCAACAAGCGGCCTGGCGCGTTTGCTCTGTACGTTGAGCC 917448 Query 249297 GTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCAT 249356 |||||| | ||||| || || || | ||| | |||||| | || || ||| || Sbjct 917447 ATGGCACTCGGATATTTTTGACTTTATCGACATCCGGAAGAACCATGGTAAGGAGGAGAT 917388 Query 249357 GAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAA 249416 ||||| | ||||| ||| | |||||| | | ||| |||||||| | ||| | Sbjct 917387 CAGAGCCAGAGACCTGTTCCCTGCGCTGTGGATTCCAGACCTGTTCATGGAGAGAGTCGA 917328 Query 249417 GGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACA 249476 | ||| || |||||||| | || || ||||| || || | || ||| | | Sbjct 917327 GCAGAACGCTGAGTGGACGCTGTTCTCGCCTTCCGAGGCTCCAGGGCTTTCCGACGTGTA 917268 Query 249477 CGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCG---GCAAGAC 249533 ||||| ||| ||| | | ||| | | ||||||| | ||| | || |||| Sbjct 917267 CGGCGACGAGTTCAAGGAGCTCTACACCAGATACGAAAAGGAAGGCCGTGGACGCCAGAC 917208 Query 249534 AATCAAGGCTCGGACCCT-TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGC 249592 ||||||| | || || | | || | ||||| |||||| || ||||| || Sbjct 917207 GGTCAAGGCACAGAAGCTGTGGTACG-CCATTTTGGAGGCCCAGACGGAAACAGGCACGC 917149 Query 249593 CGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACC 249651 | | | || ||| ||| ||||| |||||| |||||| ||||| | | ||||||| | Sbjct 917148 CAT-TCATGCTGTACAAGGACGCCTGCAACTCCAAGACCAACCAGAAGAACCTTGGTATC 917090 Query 249652 ATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGC 249710 ||| ||||| ||| | || ||| || | | | ||||| || |||||| | || Sbjct 917089 ATCAAGTCGTCTAATTTGTGCTGC-GAAATTGTCGAGTACTCATCTCCAGAGGAGGTGGC 917031 Query 249711 CGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGC-ACG-TGAGGGCG--GACAGGAC-- 249764 ||| || || |||| ||| || || | || |||| || |||| || Sbjct 917030 CGTGTGTAATTTGGCGTCGATCGCCCT-TCCAGCCTTCGTTGAGTCCGACGACAATACCA 916972 Query 249765 ----GTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGATCAAAAACCTCAACA 249820 || | ||||||| || |||| || | || | | || |||||||||| Sbjct 916971 GCTGGTACAACTTCGAAAAGCTGCACCAGATCACCAAGGTTGTCACTAAGAACCTCAACA 916912 Query 249821 AGGTGATTGATGTCAATTTTTACCCCCTT---GAGGAATGCAGGTTGTCCAACATGAAGC 249877 || | || || || | ||| || || |||| | || ||||||||| Sbjct 916911 AGATCATCGACAGAAACTATTATCCTGTTCCAGAGGCA---AGAACATCCAACATGCGCA 916855 Query 249878 ACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGATGGGATTCC 249937 || | || || |||| || |||| ||| |||||| | |||| | || || | | Sbjct 916854 ACAGGCCGATTGCCGTGGGTGTCCAGGGCCTGGCCGACGTGTTCATGCAGCTGAGACTGC 916795 Query 249938 CCTTCGAGTCAGAGGAGG-CAGCGACGCTAAATAAACAGATTTTCGAGACCATCTATCAC 249996 | || || ||| |||| ||| || ||| || | |||||||||||||||||||| ||| Sbjct 916794 CTTTTGACTCACCAGAGGCCAGAGA-GCTGAACATCCAGATTTTCGAGACCATCTACCAC 916736 Query 249997 GGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATACGAGAGTTTTCAG 250056 ||| | ||||| || ||| |||| | || || |||||||| ||| || Sbjct 916735 GGGGCTTTGGAGGCCTCTGCCGAGCTGGCCGTTAGGGATGGCAAATACGAGACCTTTGAG 916676 Query 250057 GGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGGGG 250100 || ||||| |||||| || | | ||||| || |||||||| Sbjct 916675 GGATCGCCGGCGTCGCAGGGTATTTTGCAGTTCGACCTTTGGGG 916632 >seq3 Length=1363476 Score = 114 bits (126), Expect = 3e-20 Identities = 241/356 (68%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| |||||| |||| | ||| ||||| ||| |||| | ||| ||| | || ||||| Sbjct 658462 AGACTTGGAGATGGATTACCTTGGTTTCAGAACAATGGAAAGATCATATTTGCTAAAAAT 658521 Query 248868 TGATGGCAAGATCGTGGAACGAAT--TCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 ||||| |||| | || | || | |||| | |||| ||| ||||||| | ||||| Sbjct 658522 GGATGG-AAGACCTTGCGA-GACTCCTCAGTATTTGTTTATGAGAGTGGCCATTGGGATA 658579 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 ||||| | | | ||||| |||| ||||| || |||| ||| ||| | | Sbjct 658580 CACAAAGGTAATATAGACCGCGTTCTCGAAACATACAGACTTATGTCCGAAAAATACTTC 658639 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 | ||||| | || ||||| |||||||||||||||| | | | | ||| || Sbjct 658640 ATCCATGCTTCGCCTACGCTGTTCAACGCCGGTACCGAAACGCCTAATTTATCCTCCTGT 658699 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 ||||||||||| ||| | | |||||| | | ||||||| ||| || | || | Sbjct 658700 TTTCTTCTTGCAATGGATGGGGACTCTATAAATGGCATTTTCAGAACGATTCACAAGTCC 658759 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 || |||||||||| || |||||||| || | ||| || ||||||||||| Sbjct 658760 GCCCTGATTTCTAAAGCGGCTGGCGGAATTGGCATACACGTTTCAAACATCCGAGC 658815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766303696576