Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 192 8e-44 seq2 192 8e-44 seq3 107 3e-18 >seq4 Length=1302532 Score = 192 bits (212), Expect = 8e-44 Identities = 414/609 (68%), Gaps = 14/609 (2%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| || || ||| || |||||||||||||| | || || ||||| || || || Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || || ||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACT-GTC 36330 |||||| || || || || ||||| |||| |||||||| || | ||| || ||| Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAACAGGGCTTCCTCGTC 920248 Query 36331 ATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| || || ||||| |||||||||| || | ||| || || ||||| || | Sbjct 920249 GTTGATCCATCTCATG-GCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAATGG 920307 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || || || | | ||| ||| || || || || || || |||| ||| | Sbjct 920308 CGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAGT 920367 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 || ||||||| || ||||| || || || || || ||||||||||| | ||||| | Sbjct 920368 ACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTCAG 920427 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACT 36567 || || || || | | | || ||||| | || || || || || || ||||| Sbjct 920428 GAACTTGCACCTCGGCAGAGAA--GTTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGA 920485 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGT---T 36623 || ||||| || ||||| || | ||| ||| | ||||| | || | ||| | Sbjct 920486 AGCAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGTTGTCGT-TGAGTCTGT 920544 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||||| || | | || || || | ||| | ||| || | ||||| || || |||| Sbjct 920545 TGTTCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGCCT 920604 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 ||||||| || ||||| | ||| || || || || | || || || | ||||| || Sbjct 920605 CTGCCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCTTC 920664 Query 36744 TTTGATTTT 36752 ||| ||||| Sbjct 920665 TTTTATTTT 920673 >seq2 Length=1516309 Score = 192 bits (212), Expect = 8e-44 Identities = 442/663 (67%), Gaps = 6/663 (1%) Strand=Plus/Plus Query 66035 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 66094 || || |||||| ||| | || |||| | ||| || || || |||||||| || || Sbjct 917306 CAGCGTCCACTCAGCGTTCTGCTCGACTCTCTCCATGAACAGGTCTGGAATCCACAGCGC 917365 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 || | ||||||| ||| ||||| || || ||||| | |||| || Sbjct 917366 AGGGAACAGGTCTCTGGCTCTGATCTCCTCCTTACCATGGTTCTTCCGGATGTCGATAAA 917425 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | |||||| | ||||| || || | ||| | || | | |||||||| ||||| Sbjct 917426 GTCAAAAATATCCGAGTGCCATGGCTCAACGTACAGAGCAAACGCGCCAGGCCGCTTGTT 917485 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||||| || | |||||| |||||||| || | ||||||| ||||||||| || || Sbjct 917486 GCCTCCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGATGCC 917545 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||| || || ||||| || | ||| || || | | | ||| || ||| Sbjct 917546 GTTGGACGTGCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAATGTG 917605 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 ||||| || || || || || ||||| | || || || | || |||||||| Sbjct 917606 CAGACCAATGCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATAGAT 917665 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 ||| || || || ||| ||||| || | |||||| |||||| || || || Sbjct 917666 GCCGTCGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATGAGG 917725 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || |||||||| | || || || ||||| || || |||||| || | || || Sbjct 917726 AGTACCGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAGGTT 917785 Query 66515 GTACGTCTCAAT--AGCTGAGTCTAT-ATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||||||| || |||| | | | ||| | ||| || || | || |||||||| Sbjct 917786 GTACGTCTCGATGACGCTGGGAATGTCATCGC---CATGGATACCAATGGCCACACGCAT 917842 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||||||||| ||||| || ||| || | || ||||| | || || || Sbjct 917843 GACCATGTGCTGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACCGCTC 917902 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || || || || |||||||||||||| |||||||||| ||||| | || | ||||| Sbjct 917903 CAGCGTCTTGAAGCCAAAATAGTTGTACGAAAAGTCTCTATCGTACACTATGGCAGAGTT 917962 Query 66692 GAG 66694 || Sbjct 917963 CAG 917965 >seq3 Length=1363476 Score = 107 bits (118), Expect = 3e-18 Identities = 600/934 (64%), Gaps = 40/934 (4%) Strand=Plus/Minus Query 65735 TGCAACAGATGCCAGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTAT 65791 ||| | ||| | ||||| || || ||| ||||||||| || | ||||| | || Sbjct 659395 TGCCAAAGAGCCTAGATTGCAGACTGCTGTTTCCTCATTAG-AT--GAATATTCAACGAT 659339 Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||| || ||||| |||||||||| || |||||||| || ||| |||||| || Sbjct 659338 TTCACAACAGAGATTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTTATT 659279 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || || || || || || | ||| || || || ||||| ||||||| ||| ||||| Sbjct 659278 GCAGGCGTCTTTGTAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTATCGC 659219 Query 65912 TTTCCAGACGACTCGAGCCTTT-ATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAG 65968 | ||| | | || | |||| | | || | || | || | ||| || | Sbjct 659218 ATGCCACA-GTTTCTGGGCTTTCACTTTACGGATATAGCGACCCTCACGTTCATACCTGT 659160 Query 65969 TGTATACAATCGTT-CGAACTCGTCTCCCCAAACATTGTCC---AATCCAGGACATTCAT 66024 |||| || | | | || || ||||| || |||| | ||||||| ||| || Sbjct 659159 TGTA---AAGCTTGACAAATTCATCTCCATAAG---TGTCACTGAGTCCAGGAGATTGAT 659106 Query 66025 CC--GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082 || ||| | | | |||||||| || | || ||| | |||||| | ||| || Sbjct 659105 CCTCGGAAAAA--AGGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGG 659048 Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC-TGTATTCTTTT 66141 ||||||||||| |||||||||||| | | | ||| || ||||| || || | | Sbjct 659047 TATCCAAAGAGCATAAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCCT 658988 Query 66142 TAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201 ||| || |||||| | | | || ||||||||| || || || ||| | | | | Sbjct 658987 CAAG-TCCAGGAACTCAAACACGTCTGCATGCCACGGCTCTAAATACATGCAAAAAGCGC 658929 Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261 | || | ||| ||||| || ||||| | ||| | |||||| | ||| | ||| | || Sbjct 658928 CTGGTCTTTTATTTCCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAATCA 658869 Query 66262 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAA 66321 | || | || || |||||||||||||| || || || || || || || || | Sbjct 658868 TAGGCACAAGTCCGTTGGATGTACCATTAGTTCCAGAAATGTAAGAGCCGGCAGCTCGGA 658809 Query 66322 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 | || || || || ||||| || ||| |||||| || | ||| | | | | | Sbjct 658808 TGTTTGAAACGTGTATGCCAATTCCGCCAGCCGCTTTAGAAATCAGGGCGGA-CTTGTGA 658750 Query 66382 A-CGTATCATAGATGCCCTCTATACTATCATCCAT-CATGTTAAGTAGAAAACAG--CTA 66437 | ||| | ||||| | |||| || |||| ||| ||| ||||||||| | Sbjct 658749 ATCGTTCTGAAAATGCCATTTATAGAGTC-CCCATCCATTGCAAGAAGAAAACAGGAGGA 658691 Query 66438 GACATTTGGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 | ||| || || | || || || || || | ||||| ||||| || | || | Sbjct 658690 TAAATTAGG---CGTTTCGGTACCGGCGTTGAACAGCGTAGGCGAAGCATGGATGAAGTA 658634 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 |||||| || | || |||| || || | | | |||||||| | || || || || Sbjct 658633 TTTTTCGGACATAAGTCTGTATGTTTCGAGAACGCGGTCTATATTACCTTTGTGTATCCC 658574 Query 66557 TACTGCGACACGCATTAACATGTGCTGAG--GTCTTTCAACGATCTTGTTGTTTATTTTC 66614 | || || | ||| |||| | ||||| |||| ||| | |||| | ||||| Sbjct 658573 AATGGCCACTCTCATAAACAAATACTGAGGAGTCTCGCAA-GGTCTT-CCATCCATTTTT 658516 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 66648 | ||| || ||| |||||| ||| | ||||||| Sbjct 658515 AGCAAATATGATCTTTCCATTGTTCTGAAACCAA 658482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172742409880