Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 206 4e-48 seq4 205 1e-47 seq3 105 1e-17 >seq2 Length=1516309 Score = 206 bits (228), Expect = 4e-48 Identities = 632/967 (65%), Gaps = 14/967 (1%) Strand=Plus/Plus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||||||||| || | || ||| | || ||| ||| ||| | | || || ||| Sbjct 917255 GAACTCGTCGCCGTACACGTCGGAAAGCCCTGGAGCCTCGGAAGGCGAGAACAGCGTCCA 917314 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 ||| | | | || |||| | ||| || || || |||||||| || || || || Sbjct 917315 CTCAGCGTTCTGCTCGACTCTCTCCATGAACAGGTCTGGAATCCACAGCGCAGGGAACAG 917374 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 ||||||| ||| |||||| || || ||||| | |||| || | | ||| Sbjct 917375 GTCTCTGGCTCTGATCTCCTCCTTACCATGGTTCTTCCGGATGTCGATAAAGTCAAAAAT 917434 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 ||| || ||||| || || | ||| | || | | || || || ||||| |||||||| Sbjct 917435 ATCCGAGTGCCATGGCTCAACGTACAGAGCAAACGCGCCAGGCCGCTTGTTGCCTCCCTG 917494 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | |||||| |||||||| || | ||||||| ||||||||| || || ||||| || Sbjct 917495 GTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGATGCCGTTGGACGT 917554 Query 80163 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 80222 || ||||| || | ||| || || ||| | ||| || ||| ||||| || Sbjct 917555 GCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAATGTGCAGACCAAT 917614 Query 80223 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282 || || || || ||||| | || || || | || ||||||||||| || || Sbjct 917615 GCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATAGATGCCGTCGAT 917674 Query 80283 GCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 | || || ||||| || | |||||| |||||| || || || ||| || || Sbjct 917675 GGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATGAGGAGTACCGGC 917734 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 |||||| | || || || ||||| || || |||||| |||| || ||||||||||| Sbjct 917735 ATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAGGTTGTACGTCTC 917794 Query 80403 AATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 || | | | | || ||| | ||| || || | || |||||||| | ||||||| Sbjct 917795 GAT-GACGCTGGGA-ATGTCATCGCCATGGATACCAATGGCCACACGCATGACCATGTGC 917852 Query 80461 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTA 80520 || ||||| || ||| || || || ||||| | || || |||| || || Sbjct 917853 TGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACCGCTCCAGCGTCTTG 917912 Query 80521 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 80580 || |||||||||||||| |||||||||| ||||| | || | ||||| || | || Sbjct 917913 AAGCCAAAATAGTTGTACGAAAAGTCTCTATCGTACACTATGGCAGAGTTCAGCTCGTCG 917972 Query 80581 TTATATTTGTTAACTACATCCATGGT--GATACTT--GAAATAATCGGAGAATGTTTCCC 80636 | | | || |||| ||| | | | | || || || || ||| | || || Sbjct 917973 GCGTGCTCCTGGAC--AATCC--GGTACGTTTCGTCCGAGATCATTGGCGAAGGCTTGCC 918028 Query 80637 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 80696 ||| || || || | ||||| | | | | || | || | ||| | || | || Sbjct 918029 ATTCTTGGGGTTGATATAGTGGTACAGCTGGTCAACGACCTGGGAAAACTGCTTGGTGGT 918088 Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTG 80756 || |||||| || || || | ||||||||||||||| | |||| || || ||||| Sbjct 918089 TTGCTTGTGCAGGTTGGAAATGGCTATTCTGGCGGCCAGGGTGGCGTAGTCGGGATGGAT 918148 Query 80757 TGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 80815 || || || || || || | |||||||| || | |||| || | || || || | Sbjct 918149 CGTGGT-CATGTAAGCGGCGGTCTCGGCTGCAAGGTTATCCAGCTCGATGGTGGTGACGC 918207 Query 80816 CATTATA 80822 ||| ||| Sbjct 918208 CATGATA 918214 >seq4 Length=1302532 Score = 205 bits (226), Expect = 1e-47 Identities = 407/597 (68%), Gaps = 12/597 (2%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || || ||| ||||||||||||||||| | || | ||||| || || || Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || || ||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT-----G 50130 ||| || || || || || ||||| ||||| |||||||| || ||| || ||| | Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCA-AACAGG-GCTTCCTCG 920246 Query 50131 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 || | ||||| || || ||||| |||||||||| || | ||| || || || || || Sbjct 920247 TCGTTGATCCATCTCATG-GCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAAT 920305 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||| || || || | | ||| ||| || || || || || ||||||| ||| Sbjct 920306 GGCGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGA 920365 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||| ||||||| || ||||| || || ||||| || ||||||||||| | ||||| Sbjct 920366 GTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTC 920425 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | || ||||| || | | | || || | || || || || || || ||||| Sbjct 920426 AGGAACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGA 920485 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TT 50426 || ||||| || ||||| || | ||| | | | |||||| | ||| || Sbjct 920486 AGCAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGTTGTCGTTGAGTCTGTT 920545 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||||| || | | || || || | ||| | ||| || | ||||| || || ||||| Sbjct 920546 GTTCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGCCTC 920605 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 |||||| || ||||| | ||| || || || || | ||| ||||| | ||||| || Sbjct 920606 TGCCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCT 920662 >seq3 Length=1363476 Score = 105 bits (116), Expect = 1e-17 Identities = 587/916 (64%), Gaps = 30/916 (3%) Strand=Plus/Minus Query 79627 AGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGG 79683 ||||| || || ||| ||||||||| || | ||||| | |||||| ||||| Sbjct 659382 AGATTGCAGACTGCTGTTTCCTCATTAG-AT--GAATATTCAACGATTTCACAACAGAGA 659326 Query 79684 TTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 79743 || |||| ||||| || |||||||| || ||| |||||| || || || || || Sbjct 659325 TTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTTATTGCAGGCGTCTTTG 659266 Query 79744 TAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 79803 || || | ||| || || || ||||| ||||||| ||| ||||| | ||| | | | Sbjct 659265 TAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTATCGCATGCCACA-GTTT 659207 Query 79804 CGAGCCTTT-ATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT- 79861 | | |||| | | || | || | || | ||| || ||| | ||| || Sbjct 659206 CTGGGCTTTCACTTTACGGATATAGCGACCCTCACGTTCATACC-TGT-TGTAAAGCTTG 659149 Query 79862 -CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA--GGACACATCAACG 79918 | || || ||||| || || | ||||||| ||| || ||| | | | Sbjct 659148 ACAAATTCATCTCCATAAGTGTCACTGAGTCCAGGAGATTGATCCTCGGAAAAA--AGGC 659091 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 |||||||| ||| | || ||| | |||||| | ||| || ||||||||||| || Sbjct 659090 ACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGGTATCCAAAGAGCATAAA 659031 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCC 80037 ||| |||||| | | | || || ||||| || || | | ||| || |||||| | Sbjct 659030 ATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCCTCAAG-TCCAGGAACTCA 658972 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | || | ||||||||| || || || ||| | | | || |||| ||| ||||| Sbjct 658971 AACACGTCTGCATGCCACGGCTCTAAATACATGCAAAAAGCGCCTGGTCTTTTATTTCCA 658912 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || ||||| | ||| | |||||| | ||| | ||| | ||| || | || || ||| Sbjct 658911 CCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAATCATAGGCACAAGTCCGTTG 658852 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 ||||||||||| || || || || || || || || || || || || Sbjct 658851 GATGTACCATTAGTTCCAGAAATGTAAGAGCCGGCAGCTCGGATGTTTGAAACGTGTATG 658792 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 80276 || ||||| || ||| |||||| || | ||| | | | | || ||| | ||||| Sbjct 658791 CCAATTCCGCCAGCCGCTTTAGAAATCAGGGCGGA-CTTGTGAATCGTTCTGAAAATGCC 658733 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGACGACT- 80333 | ||| || || ||| ||| ||||||||| | | ||| || || | Sbjct 658732 ATTTATAGAGTCCCCATCCATTGCAAGAAGAAAACAGGAGGATAAATTAGG---CGTTTC 658676 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||||| ||||| || | || ||||||| |||| || | Sbjct 658675 GGTACCGGCGTTGAACAGCGTAGGCGAAGCATGGATGAAGTATTTTTCGGACATAAGTCT 658616 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || || | | | ||||||| | || || || || | || || | ||| || Sbjct 658615 GTATGTTTCGAGAACGCGGTCTATATTACCTTTGTGTATCCCAATGGCCACTCTCATAAA 658556 Query 80454 CATGTGCTGAG--GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 || | ||||| |||| ||| | |||| || ||||| | ||| || ||| ||||| Sbjct 658555 CAAATACTGAGGAGTCTCGCAA-GGTCTT-CCATCCATTTTTAGCAAATATGATCTTTCC 658498 Query 80512 AAAGTTTTAAAACCAA 80527 | ||| | ||||||| Sbjct 658497 ATTGTTCTGAAACCAA 658482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268737151480