Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-47 seq4 192 8e-44 seq3 116 5e-21 >seq2 Length=1516309 Score = 203 bits (224), Expect = 4e-47 Identities = 542/821 (66%), Gaps = 12/821 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| | ||| || || || |||||||| || || || || ||||||| ||| | Sbjct 917331 ACTCTCTCCATGAACAGGTCTGGAATCCACAGCGCAGGGAACAGGTCTCTGGCTCTGATC 917390 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| | |||| || | | |||||| || ||||| || Sbjct 917391 TCCTCCTTACCATGGTTCTTCCGGATGTCGATAAAGTCAAAAATATCCGAGTGCCATGGC 917450 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| | || | | || ||||| ||||| |||||||| || | |||||| ||| Sbjct 917451 TCAACGTACAGAGCAAACGCGCCAGGCCGCTTGTTGCCTCCCTGGTCGACGTATCTGGCG 917510 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || | ||||||| ||||||||| || || ||||| | || ||||| || | | Sbjct 917511 GTGTTGTTGAACACTCTCACCATTGGAATGATGCCGTTGGACGTGCCGTTGGTTCCAGCG 917570 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || || ||| | ||| ||| ||| ||||| || || || || || Sbjct 917571 ATGTAAGACCCGGTGGATCTAATGTTGTGAATGTGCAGACCAATGCCTCCAGCAGCCTTG 917630 Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 ||||| | || || || | || ||||||||||| || || || ||| ||||| Sbjct 917631 GAGATCAGAGCACAGGTCTTGAGGGTGTCATAGATGCCGTCGATGGAGTCGTCCTTCATG 917690 Query 72382 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 72441 || | |||||| |||||| || || || ||| || |||||||| | || || Sbjct 917691 GCAACCAAGAAACAGGAAGACATCTGCGGATGAGGAGTACCGGCATTAAACAGAGTTGGC 917750 Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 72501 || ||||| || || |||||| |||| || ||||||||||| || | | | | | Sbjct 917751 GACGCGTGGGTGAAGAATTTTTGCGACATCAGGTTGTACGTCTCGAT-GACGCTGGGA-A 917808 Query 72502 TCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 | ||| | ||| || || | || |||||||| | ||| ||||| ||||| || ||| Sbjct 917809 TGTCATCGCCATGGATACCAATGGCCACACGCATGACCATGTGCTGGGGTCTCTCGGCGA 917868 Query 72560 TCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 72619 || || || ||||| | || || |||| || || || ||||||||||||| Sbjct 917869 CTTTTCCATCAATCTTCAAGAGATATGACCGCTCCAGCGTCTTGAAGCCAAAATAGTTGT 917928 Query 72620 ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTA 72679 | |||||||||| ||||| | || | || || || | || | | | || Sbjct 917929 ACGAAAAGTCTCTATCGTACACTATGGCAGAGTTCAGCTCGTCGGCGTGCTCCTGGAC-- 917986 Query 72680 TATCCATGGT--GATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 |||| ||| | | | | || || || || ||| | || ||||| || || || | | Sbjct 917987 AATCC--GGTACGTTTCGTCCGAGATCATTGGCGAAGGCTTGCCATTCTTGGGGTTGATA 918044 Query 72736 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 |||| | | | | || | || | ||| | || | |||| |||||| || || Sbjct 918045 TAGTGGTACAGCTGGTCAACGACCTGGGAAAACTGCTTGGTGGTTTGCTTGTGCAGGTTG 918104 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || | ||||||||||||||| || |||| || || ||||| Sbjct 918105 GAAATGGCTATTCTGGCGGCCAGGGTGGCGTAGTCGGGATG 918145 >seq4 Length=1302532 Score = 192 bits (212), Expect = 8e-44 Identities = 404/595 (68%), Gaps = 8/595 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || || ||| ||||||||||| ||||| | || || ||||| || || || Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || || ||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACT-GTC 42237 ||| || || || || || ||||| |||| |||||||| || | ||| || ||| Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAACAGGGCTTCCTCGTC 920248 Query 42238 ATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||| || || ||||| |||||||||| || | ||| || || || || |||| Sbjct 920249 GTTGATCCATCTCATG-GCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAATGG 920307 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | || || || | | ||| ||| || || || || || ||||||| ||| | Sbjct 920308 CGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAGT 920367 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 || |||| || || ||||| || || ||||| || ||||||||||| ||||||| | Sbjct 920368 ACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTCAG 920427 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||| || || || | | | || || | || || ||||| || || ||||| | Sbjct 920428 GAACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAG 920487 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTG-TTAATTTAT 42533 | ||||| || ||||| || | ||| ||| | |||| || || | || | Sbjct 920488 CAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGTTGTCGTTGAGTCTGTTGT 920547 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 |||| || | | || || || | ||| | ||| ||| | ||||| || || || |||| Sbjct 920548 TCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGCCTCTG 920607 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 |||| || ||||| | ||| || || || || | || ||||| | ||||| || Sbjct 920608 CCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCT 920662 >seq3 Length=1363476 Score = 116 bits (128), Expect = 5e-21 Identities = 594/920 (65%), Gaps = 38/920 (4%) Strand=Plus/Minus Query 71710 AGATTACAAACGGCTA---CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGA 71766 ||||| || || ||| ||||||||| || | ||||| | |||||| || ||| Sbjct 659382 AGATTGCAGACTGCTGTTTCCTCATTAG-AT--GAATATTCAACGATTTCACAACAGAGA 659326 Query 71767 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 71826 || |||||||||| || |||||||| || ||| |||||| || || || || || Sbjct 659325 TTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTTATTGCAGGCGTCTTTG 659266 Query 71827 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 71886 || || | || || || || ||||| ||||||| ||| ||||| | ||| | | | Sbjct 659265 TAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTATCGCATGCCACA-GTTT 659207 Query 71887 CGAGCCTTT-ATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT- 71944 | | |||| | | || | || | || | ||| || ||| | ||| || Sbjct 659206 CTGGGCTTTCACTTTACGGATATAGCGACCCTCACGTTCATACC-TGT-TGTAAAGCTTG 659149 Query 71945 -CGAACTCGTCTCCCCAAGCATTGTCT---AATCCAGGACATTCAT--TCGGACACATCA 71998 | || || ||||| ||| |||| | ||||||| ||| || ||||| | | | Sbjct 659148 ACAAATTCATCTCCATAAG---TGTCACTGAGTCCAGGAGATTGATCCTCGGAAAAA--A 659094 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 |||||||| ||| | | ||| | |||||| | ||| || ||||||||||| Sbjct 659093 GGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGGTATCCAAAGAGCAT 659034 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAAC 72117 ||||| |||||| | | | || || ||||| || || | | ||| || |||||| Sbjct 659033 AAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCCTCAAG-TCCAGGAAC 658975 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | || | ||||||||| || || || ||| | | | || || | ||| ||| Sbjct 658974 TCAAACACGTCTGCATGCCACGGCTCTAAATACATGCAAAAAGCGCCTGGTCTTTTATTT 658915 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | ||| | |||||| | ||| | ||| | ||| || | || || Sbjct 658914 CCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAATCATAGGCACAAGTCCG 658855 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| |||||| || || || || || || || || || || || | Sbjct 658854 TTGGATGTACCATTAGTTCCAGAAATGTAAGAGCCGGCAGCTCGGATGTTTGAAACGTGT 658795 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGAT 72356 | || ||||| || ||| |||||| || | ||| | | | | || ||| | || Sbjct 658794 ATGCCAATTCCGCCAGCCGCTTTAGAAATCAGGGCGGA-CTTGTGAATCGTTCTGAAAAT 658736 Query 72357 GCCCTCTATACTATCATCCAT-CATGTTAAGTAGAAAACAG--CTAGACATTTGGTGACG 72413 ||| | |||| || |||| ||| ||| ||||||||| | | ||| || || Sbjct 658735 GCCATTTATAGAGTC-CCCATCCATTGCAAGAAGAAAACAGGAGGATAAATTAGG---CG 658680 Query 72414 ACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 | || || || || || | ||||| ||||| || | || ||||||| |||| | Sbjct 658679 TTTCGGTACCGGCGTTGAACAGCGTAGGCGAAGCATGGATGAAGTATTTTTCGGACATAA 658620 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCA 72532 | |||| || || | | | ||||||| | || ||||| || | || || | || Sbjct 658619 GTCTGTATGTTTCGAGAACGCGGTCTATATTACCTTTGTGTATCCCAATGGCCACTCTCA 658560 Query 72533 TTAACATATGCTGAG--GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 | |||| || ||||| |||| ||| | |||| || ||||| | ||| || ||| | Sbjct 658559 TAAACAAATACTGAGGAGTCTCGCAA-GGTCTT-CCATCCATTTTTAGCAAATATGATCT 658502 Query 72591 TTCCAAAGTTTTAAAACCAA 72610 ||||| ||| | ||||||| Sbjct 658501 TTCCATTGTTCTGAAACCAA 658482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139141275320