Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 302 7e-77 seq2 131 2e-25 seq1 127 3e-24 >seq4 Length=1302532 Score = 302 bits (334), Expect = 7e-77 Identities = 614/898 (68%), Gaps = 29/898 (3%) Strand=Plus/Minus Query 124983 AGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCT 125042 || || ||| | |||| || |||| ||| || || |||||| | |||||||| ||||| Sbjct 920665 AGAAGGTTTGTCTTGTTCCCTATCAAGTACCACGAGATTTGGCAGATGTACAAGAAGGCA 920606 Query 125043 CAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG 125102 ||||||| || ||||| | || || |||||||||||||||||||| |||| ||| | Sbjct 920605 GAGGCCTCGTTCTGGACCGCAGAGGAAATCGATCTGTCCAAGGACCTGCACGACTGGAAC 920546 Query 125103 ACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | | | | || | ||| || | ||| | ||| | |||||||||||||| | Sbjct 920545 AACAGACTCAACGACAACGAGAGATACTTTGTTTCGAGAGTGTTGGCCTTCTTTGCTGCT 920486 Query 125163 TCCGATGGAATCGTCAACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCATTCC 125221 || || || || |||||||| || | || || | |||||| ||| || |||| Sbjct 920485 TCGGACGGCATTGTCAACGAGAACTTGGTCGAGA-ACTTCTCTGCCGAGGTGCAAGTTCC 920427 Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281 |||| ||| || ||||| ||||| |||||||| |||||| | |||||||||| ||| Sbjct 920426 TGAGGCCAAGTGTTTCTACGGGTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTA 920367 Query 125282 CTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAAC 125339 ||| ||||| |||| ||| | || | | | | || | | | || || ||| Sbjct 920366 CTCGCTTCTGATCGACACCTACGTCAAGGA--CCCTAAGGAAGCTGAGTTCCTTTTCAAC 920309 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || || || || | || | ||| | ||||| |||||| || | |||||| | Sbjct 920308 GCCATTGAGACCATCCCATGTATCAAGGAGAAGGCCGAATGGGCCATGAGATGGATCAAC 920249 Query 125400 GACGA-CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTT 125458 ||||| ||| | | || ||||| ||||| || || || || ||||| ||||| || || Sbjct 920248 GACGAGGAAGCCCT-GTTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTT 920190 Query 125459 CTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACT 125518 ||| || || ||||| | ||||| |||||||||||| | ||||| ||||| || || Sbjct 920189 CTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCT 920130 Query 125519 GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCT 125578 ||| | |||||||| || | |||||||||| || || ||||||||| ||| Sbjct 920129 GACCTTCTCGAACGAGTTGATCTGCAGAGACGAGGGTCTGCATACCGACTTTGCCTGTCT 920070 Query 125579 ACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAAC 125636 || || ||||| || | | | ||| | |||| || | || |||| Sbjct 920069 GCTCTTCTCGCACCTCAACAACACCCC--------AAACAGC---GACATCGTGCTCAAG 920021 Query 125637 ATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC-TAACCGAATCCCTACCGGTCAG 125695 || | ||||| ||||| ||| ||| ||||| | | | ||||| |||| || |||| Sbjct 920020 ATCATCACCGAGGCCGTCGAGATCGAA-AAGAGATACTTCACCGACGCCCTGCCTGTCAA 919962 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || | || ||||||||||| || |||||| ||||| | |||||||| || || || || Sbjct 919961 CCTGCTGGGTATGAACTGCAACCTGATGTGCCAGTACGTGGAGTTTGTTGCTGACCGGCT 919902 Query 125756 ACTGTACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCAT 125812 || | | | ||| |||||| |||||||||| || || || || ||||| Sbjct 919901 GCTTT---TATCTCTGGGCTGCAAGAAGCACTACAACGCCACAAACCCGTTCGACTTCAT 919845 Query 125813 GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | | ||| || || | || ||||||||||| |||||||||| ||| ||| ||| Sbjct 919844 GGAGAACATCTCTCTTGCAGGCAAGACCAACTTCTTCGAGAAGAGAGTCTCCGATTAC 919787 >seq2 Length=1516309 Score = 131 bits (144), Expect = 2e-25 Identities = 375/563 (67%), Gaps = 14/563 (2%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||| ||||||| ||| ||| | | |||||| | ||| ||| ||| || | || Sbjct 917564 AACCAACGGCACGTCCAACGGCATCATTCCAATGGTGAGAGTGTTCAACAACACCGCCA- 917506 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || ||||| ||||| | || | ||| | || || | Sbjct 917505 GATACGTCGACCAGGGAGGCAACAAGCGGCCTGGCGCGTTTGCTCTGTACGTTGAGCCAT 917446 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| |||| |||||||||||||||| || || || ||| ||| || ||| Sbjct 917445 GGCACTCGGATATTTTTGACTTTATCGACATCCGGAAGAACCATGGTAAGGAGGAGATCA 917386 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 ||||||| ||| |||| ||| || ||| | ||||| |||||||| || | ||| | | Sbjct 917385 GAGCCAGAGACCTGTTCCCTGCGCTGTGGATTCCAGACCTGTTCATGGAGAGAGTCGA-G 917327 Query 97045 ACGGTGGCT-ACTGGAGCCTAATGT-GCC--CCGACTCGTCACCCGGTCTGTCCGATTGC 97100 | ||| | |||| || | | ||| |||| | | || || || ||||| Sbjct 917326 CAGAACGCTGAGTGGACGCTGTTCTCGCCTTCCGA---GGCTCCAGGGCTTTCCGACGTG 917270 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAG 97159 | ||||| ||||| ||| ||||| ||||| | || ||||| ||| || Sbjct 917269 TACGGCGACGAGTTCAAGGAGCTCTACACCAGATACGAAAAGGAAGGCCGTGGACGCCAG 917210 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 ||| ||| | |||| |||| |||||| | ||||| || ||| ||| || || || | Sbjct 917209 ACG-GTCAAGGCAC-AGAAGCTGTGGTACGCCATTTTGGAGGCCCAGACGGAAACAGGCA 917152 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 | || | ||| || |||||||| || || ||| | |||||| || | || | Sbjct 917151 CGCCATTCATGCTGTACAAGGACGCCTGCAACTCCAAGACCAACCAGAAGAACCTTGGTA 917092 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 ||||||| || ||| ||||| |||||||| |||||| | ||||| || ||| || Sbjct 917091 TCATCAAGTCGTCTAATTTGTGCTGCGAAATTGTCGAGTACTCATCTCCAGAGGAGGTGG 917032 Query 97339 CAGTTTGCGTTCTGGCATCGGTC 97361 | || || | |||| ||| || Sbjct 917031 CCGTGTGTAATTTGGCGTCGATC 917009 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 98046 ACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTAC 98105 || ||||||||||||||| || | | ||||| ||||| ||||||||||| | ||| Sbjct 916303 ACCGTCTGGGAGATTCCGCAGAAAAGCATTATCGACATGGCGGCCGACAGAGGCGCGTAC 916244 Query 98106 ATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC--GTATGA 98163 || |||||| || ||| | ||| | || | || |||| | | | | || ||| Sbjct 916243 ATCGACCAGTCGCAGTCGATGAATATCCACCTCAA-GAACCCAACCATGGGCAAGT-TGA 916186 Query 98164 CTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAA 98223 | ||||| ||||| || | ||||| || || |||||||| ||||||||||| || |||| Sbjct 916185 CGTCGATGCACTTCTATGGCTGGAAGAAAGGACTCAAGACCGGCATGTACTACCTCAGAA 916126 Query 98224 C 98224 | Sbjct 916125 C 916125 >seq1 Length=1541475 Score = 127 bits (140), Expect = 3e-24 Identities = 275/406 (68%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943 |||||||| || ||||| ||||| ||||| | || ||| |||| || || | | || Sbjct 1116101 GACAACAAACTCCCTCTATTGACAACCAAAAAGGTGTTTTTCAAAGGTATCCTTCACGAA 1116160 Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACA 70002 || | ||| | ||| | ||| ||| ||||||| | |||| |||| ||||| || | Sbjct 1116161 CTTCTCTGGTTTATTGCTGGAGAGACAGATGCCAAGAAACTGA-CCGAGAAGGGCGTCAA 1116219 Query 70003 CATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGAC 70061 || ||| || || | | || | || | | || ||||||||| | || |||| | Sbjct 1116220 AATATGGGAAGGAAATGGATCTAGA-GAGTATCTTGACTCGCTCGGCCTGACACACAGGC 1116278 Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 || || ||||| || ||||| ||||| ||||| ||||| |||| || | | |||| Sbjct 1116279 GGGAAGGAGATCTCGGTCCAGTTTACGGCTTCCAATGGAGACACTTTGGGGCAGAATATG 1116338 Query 70122 TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACA 70181 | ||| ||| |||||||| | || | ||| ||||| || | ||||||||| | Sbjct 1116339 TCGACGCCGATACAGACTACACAGGCAAAGGTTACGATCAGCTGGCCAAAATCATTGATA 1116398 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 || | | ||||| || ||||| || || | || || ||||||||||| | | || Sbjct 1116399 CTTTGAGAACCAACCCCTACGATAGAAGAATTATTTTGAGCGCATGGAATCCTCCGGCTT 1116458 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA 70287 | | | ||||| || ||||| || || ||| ||||||||| Sbjct 1116459 TCAAGGACATGGCTCTTCCACCATGCCATGTTTTCTGTCAGTTTTA 1116504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059135157320