Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq2 129 6e-25 seq1 89.7 5e-13 >seq4 Length=1302532 Score = 134 bits (148), Expect = 1e-26 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATG 52403 ||||| | ||||| |||| |||||| | ||| ||| | | |||||| | | Sbjct 920278 AAGGCCGAATGGGCCATGAGATGGATCAACGACGAGGAAGCCCTGTTTGCCGAGAGACTC 920219 Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 || || || || || ||||| | || || || ||| |||||| | ||||| | Sbjct 920218 GTTGCGTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGCTCGTTTGCCTCGATCTTCTGG 920159 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | || | || ||| | ||||| || ||||| ||| ||||||||||| | | ||| Sbjct 920158 CTCAAGAAGAGAGGACTGATGCCTGGTCTGACCTTCTCGAACGAGTTGATCTGCAGAGAC 920099 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 || || ||||| || |||||||| || || || | ||| | | | | | | Sbjct 920098 GAGGGTCTGCATACCGACTTTGCCTGTCTGCTCTTCT---CGCACCTCAACAACACCCCA 920042 Query 52584 GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTT 52643 | |||| | || | || ||| ||||| || | ||||||||| | || Sbjct 920041 AACAGCGACATCGTGCTCAAGATCATCACCGAGGCCGTCGAGATCGAAAAGAGATACTTC 919982 Query 52644 ACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC-ATGTGCGAGTACAT 52702 || | ||| ||||| ||| | |||||||| |||||| ||| | |||||| ||||| | Sbjct 919981 ACCGACGCCCTGCCTGTCAACCTGCTGGGTATGAACT-GCAACCTGATGTGCCAGTACGT 919923 Query 52703 CGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA-AAGTACTTCAACGCT 52760 |||||||| || || || ||| | | | ||| |||| || | ||| ||| |||||| Sbjct 919922 GGAGTTTGTTGCTGACCGGCTGCTTTT--ATCTCTGGGCTGCAAGAAGCACTACAACGCC 919865 Query 52761 CGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG 52820 || ||||| || || ||| | ||||| || |||| |||||||||||||| |||||| Sbjct 919864 ACAAACCCGTTCGACTTCATGGAGAACATCTCTCTTGCAGGCAAGACCAACTTCTTCGAG 919805 Query 52821 AAGCGAGTCGGCGAGTA 52837 ||| ||||| ||| || Sbjct 919804 AAGAGAGTCTCCGATTA 919788 >seq2 Length=1516309 Score = 129 bits (142), Expect = 6e-25 Identities = 192/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 ||||||||||||||| ||||| | | | | ||||||||| ||| |||| |||||| Sbjct 917661 TAGATGCCGTCGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGA 917720 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 | || || || ||| || || || |||||| || || | |||||| |||| Sbjct 917721 TGAGGAGTACCGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATC 917780 Query 154368 ATGCGGTACGTTTCGATGGCGTCTTCG-ATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 | | |||||| |||||| || || | || |||||||| || || || | || || || Sbjct 917781 AGGTTGTACGTCTCGATGACG-CTGGGAATGTCATCGCCATGGATACCAATGGCCACACG 917839 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATT 154486 ||||| ||||||||| || | ||||||||| | |||||||||||||||||| Sbjct 917840 CATGACCATGTGCTGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACCG 917899 Query 154487 TTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 || || || ||| | || ||||| ||||| Sbjct 917900 CTCCAGCGTCTTGAAGCCAAAATAGTTGTA 917929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || ||| ||||| | | ||||| ||||| ||||||||||| Sbjct 177337 CCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAA 177396 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||||||||| ||||||| |||| | | || ||||| ||||| Sbjct 177397 AGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGG 177456 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | |||||||| ||||| ||| Sbjct 177457 ATTCCTTCTTTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCGACC 177516 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || || ||||||||||| Sbjct 177517 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 177563 >seq1 Length=1541475 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| | || | | | |||||||||||||||||||| ||| | Sbjct 445748 CCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGAC 445807 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || || || ||||| | | | || || | || ||||| ||||| Sbjct 445808 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGG 445867 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | || | | || | ||||| | ||||| || Sbjct 445868 ATTCCTTCCTTATC-TTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAAC 445926 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| ||||| || ||||| ||||| Sbjct 445927 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| | ||| | | | ||||||||||||||||| |||||| Sbjct 445292 CCACCTCTCAATCTCAAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGAT 445351 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| |||||||| ||||| | | || || | || ||||| || || Sbjct 445352 AACGTTCTACCGTCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGG 445411 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | || | | || | ||||| | ||||| || Sbjct 445412 ATTCCTTCCTTATC-TTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAAC 445470 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| ||||| || ||||| ||||| Sbjct 445471 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262356577040