Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq2 100 3e-16 >seq1 Length=1541475 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||||| || || |||||||| || ||||| ||| | ||| || Sbjct 445304 CTCAAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGATAACGTTCTACCG 445363 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| || || ||| | || | || ||||||||| || || || ||||| ||| Sbjct 445364 TCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGGATTCCTTCCTTA 445423 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| |||| || | ||||| || ||||| || || || || | Sbjct 445424 TCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATG 445483 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || ||||||||||| Sbjct 445484 GTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || || |||| || || |||||||| || || |||||| | ||| || Sbjct 445760 CTCAAAACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGACAGAGTTCTACCG 445819 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | || || || || | || | || ||||||||| || || || ||||| ||| Sbjct 445820 TCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTTA 445879 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| |||| || | ||||| || ||||| || || || || | Sbjct 445880 TCTTGAATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATG 445939 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || ||||||||||| Sbjct 445940 GTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || ||||| || | ||| || || |||||||| || || || |||||| | ||| || Sbjct 445073 AGTCTCAAAACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCGGACAGAGTTCTA 445132 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || || | || || || || | || | || ||||||||| || || || ||||| Sbjct 445133 CCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGGGGGATTCCTTCC 445192 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 ||||| |||||||| |||| || | || | ||||| || ||||| || || || || Sbjct 445193 TTATCCTGAATTTTGGACTTGA-CGTTATCGATAGTGTCAGAGGACTCAACCTCAAGGGT 445251 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | ||||| || ||||||||||| Sbjct 445252 GATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 445290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || || || || || || |||||| | ||| || || || | || Sbjct 446000 TGCAAGGTAGACTCTTTCTGAATGTTGTAATCGGACAGAGTTCTACCGTCTTCTAGCTGC 446059 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || ||||||||| || || || ||||| ||||||||||| || Sbjct 446060 TTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTTATCTTGAATCTTC 446119 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| ||||| || || || | ||| | ||||||||||| Sbjct 446120 GATTTGACATTATCGATAGTGTCAGAAGATTCTACCTCTAAAGTGATAGTTTTGCCGGTC 446179 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||| ||||| Sbjct 446180 AAAGTCTTAACGAAAATCTGCAT 446202 >seq2 Length=1516309 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||| || | ||||| || || || |||||||| || || || | |||| | Sbjct 177346 AGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAAAGGGTTCTG 177405 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || || | ||| || || ||| | ||||||| ||||||||| || || || |||||| Sbjct 177406 CCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGGATTCCTTCT 177465 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || ||||| || || |||| || | || | |||||||||||||||||| || | || Sbjct 177466 TTGTCTTGGATCTTGGACTTGA-CGTTATCGATGGTGTCGGAAGACTCGACCTCCAAGGT 177524 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || || || ||||| ||||| Sbjct 177525 GATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 177563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||| | |||||| ||||| |||||||||||| || ||||| |||| Sbjct 917161 GAAACAGGCACGCCATTCATGCTGTACAAGGACGCCTGCAACTCCAAGACCAACCAGAAG 917102 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 ||| | || | || || | |||| | |||| ||||||| |||| ||| | | Sbjct 917101 AACCTTGGTATCATCAAGTCGTCTAATTTGTGCTGCGAAATTGTCGAGTACTCATCTCCA 917042 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 || | |||||||||||||||||||| ||||| Sbjct 917041 GAGGAGGTGGCCGTGTGTAATTTGGCGTCGAT 917010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003160449720