Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 273 2e-68 seq2 104 2e-17 seq7 100 3e-16 >seq4 Length=1302532 Score = 273 bits (302), Expect = 2e-68 Identities = 567/830 (68%), Gaps = 27/830 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || || | |||| || ||| | ||| || || || ||||| Sbjct 919803 TTCTCGAAGAAGTTGGTCTTGCC-TGCAAGAGAGATGTTCTCCATGAAGTCGAACGGGTT 919861 Query 132684 GGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | | |||||||||||| ||| | ||| | ||||||| ||| || || ||||| Sbjct 919862 TGTGGCGTTGTAGTGCTTCTTGCAGCCCAGAGATAAAAGCAGCCGGTCAGCAACAAACTC 919921 Query 132744 GATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 | ||| || |||| |||| ||| || | |||||||| || ||||| || ||| Sbjct 919922 CACGTACTGGCACATCAGGTT--GCAGTTCATACCCAGCAGGTTGACAGGCAGGGCGTCG 919979 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG-C 132860 |||| | | | ||||| |||| || ||||||| ||| | | | || || | | Sbjct 919980 GTGAAGTATCTCTTTTCGATCTCGACGGCCTCGGTGATGATCT---TGA-GCACGATGTC 920035 Query 132861 GCTC----GGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 ||| || |||| | ||| ||| | || || ||||||||| ||||| | Sbjct 920036 GCTGTTTGGGGTGTTGTTG-AGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTATGCAGAC 920094 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| | || | ||||| ||| |||| || ||||| || || | || | Sbjct 920095 CCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGTCAGACCAGGCATCAGTCCTCTCTTCT 920154 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || | ||| || ||| || ||||| | ||||| ||||| || || | Sbjct 920155 TGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAGAAAATACCCTCCACGGCAGCAAACG 920214 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || || | |||| | ||| |||||| | | | |||||| | || |||||||||| Sbjct 920215 CAACGAGTCTCTCGGCAAACAGGGCTTCCTCGTCGTTGATCCATCTCATGGCCCATTCGG 920274 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTC 133154 |||| || |||| || || || || || |||||||| || | ||| || ||| ||| Sbjct 920275 CCTTCTCCTTGATACATGGGATGGTCTCAATGGCGTTGAAAAGGAACTCAGCTTC-CTT- 920332 Query 133155 CGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 ||| | |||||||||||||| || ||| ||| |||||||||| | ||||||| Sbjct 920333 --AGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAGTACGTTTCCGAGTGGATGTTCTCC 920390 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || ||| || || ||||| || ||| ||||| || ||||| || || ||| Sbjct 920391 ATCATGATCTGGAACCCGTAGAAACACTTGGCCTCAGGAACTTGCACCTCGGCAGAGAAG 920450 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 |||||||| || |||||||| |||||||| || || || ||||||| ||| | Sbjct 920451 TTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCAAAGAAGGCCAACACTCTC 920510 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGAC 133389 | || | | |||||||||||| | | | ||||||| || |||||||||| Sbjct 920511 GAAACAAAGTATCTCTCGTTGTCGTTGAGTCTGTTGTTCCAGTCGTGCAGGTCCTTGGAC 920570 Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | ||||| ||||||| ||||| ||||| || || |||||||| Sbjct 920571 AGATCGATTTCCTCTGCGGTCCAGAACGAGGCCTCTGCCTTCTTGTACAT 920620 >seq2 Length=1516309 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || || || ||||||||| | || |||||| | Sbjct 177566 AAAATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCT 177507 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| |||||||| ||||| || | || Sbjct 177506 TCCGACACCATCGATAACG-TCAAGTCCAAGATCCAAGACAAAGAAGGAATCCCTCCTGA 177448 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || | | || | ||| || || || || || |||| | ||||| ||||| Sbjct 177447 CCAGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTTCAGACTA 177388 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| || | || |||||||||| ||| | ||||||| || Sbjct 177387 CAACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGAGGTGG 177337 >seq7 Length=988507 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || || || || |||||| |||| || ||| | | Sbjct 50304 AATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 50245 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || || |||| ||||| |||||||| || | |||| Sbjct 50244 CGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACC 50186 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | || |||| ||| || || ||||| || |||| | || || ||||||| Sbjct 50185 AGCAAAGACTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACA 50126 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || |||| |||| || | ||||||| || Sbjct 50125 ACATCCAGAAGGAGTCCACTTTGCACCTGGTCCTCAGACTGAGAGGTGG 50077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172756234880