Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq4 96.9 4e-15 >seq2 Length=1516309 Score = 215 bits (238), Expect = 6e-51 Identities = 1117/1758 (64%), Gaps = 47/1758 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || || ||||||||||| || || ||| || Sbjct 917857 CCCCAGCACATGGTCATGCGTGTGGCCATTGGTATCCATGGCGATGACATTCCCAGCGTC 917798 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | | |||| |||||| | ||||| || || Sbjct 917797 ATCGAGACGTACAACCTGATGTCGCAAAAATTCTTCACCCACGCGTCGCCAACTCTGTTT 917738 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || ||||| || || || ||||| |||||| | |||| | ||||| || Sbjct 917737 AATGCCGGTACTCCTCATCCGCAGATGTCTTCCTGTTTCTTGGTTGCCATGAAGGACGAC 917678 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||| | ||||| || | ||| |||| ||||| | ||||| ||| ||||| Sbjct 917677 TCCATCGACGGCATCTATGACACCCTCAAGACCTGTGCTCTGATCTCCAAGGCTGCTGGA 917618 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || ||||||| || | | ||| ||| | |||| || || || || Sbjct 917617 GGCATTGGTCTGCACATTCACAACATTAGATCCACCGGGTCTTACATCGCTGGAACCAAC 917558 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || || ||||||||| | | || || ||| ||| || | || || Sbjct 917557 GGCACGTCCAACGGCATCATTCCAATGGTGAGAGTGTTCAACAACACCGCCAGATACGTC 917498 Query 111972 AACCAAGCTGGGCGTCG-CAAGGGATCTATCGCAGTCTATCT------TGAGCCATGGCA 112024 |||| ||| | | |||| | || ||| | ||| |||||||||||| Sbjct 917497 GACCA----GGGAGGCAACAAGCGGCCTGGCGCGTTTGCTCTGTACGTTGAGCCATGGCA 917442 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | ||||||| | || || | || | || ||||| ||| | |||||| | | | Sbjct 917441 CTCGGATATTTTTGACTTTATCGACATCCGGAAGAACCATGGTAAGGAGGAGAT-CAGAG 917383 Query 112085 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 || | || || ||| | || || ||||||||||| || |||||| ||||||| ||| ||| Sbjct 917382 CCAGAGACCTGTTCCCTGCGCTGTGGATTCCAGACCTGTTCATGGAGAGAGTCGAGCAGA 917323 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG---G 112200 | | ||| | || || | || | |||| || || || ||||| |||| | Sbjct 917322 ACGCTGAGTGGACGCTGTTCTCGCCTTCCGAGGCTCCAGGGCTTTCCGA---CGTGTACG 917266 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-GACG 112259 | || ||||| | | |||||||| | ||||| ||| ||| | | ||| | |||| Sbjct 917265 GCGACGAGTTCAAGGAGCTCTACACCAGATACGA-AAAGGAAGGCCGTGGACGCCAGACG 917207 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || | || | ||||| | || ||| | || | || || || || || || || Sbjct 917206 GT-CAAGGCACAGAAGCTGTGGTACGCCATTTTGGAGGCCCAGACGGAAACAGGCACGCC 917148 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||||| ||||| |||||||| ||| |||| || || ||||| | ||| | || Sbjct 917147 ATTCATGCTGTACAAGGACGCCTGCAACTCCAAGACCAACCAGAAGAACCTTGGTATCAT 917088 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||| || || | || ||||| | || | || ||| ||| ||| || Sbjct 917087 CAAGTCGTCTAATTTGTGCTGCGAAATTGTCGAGTACTCATCTCCAGAGGAGGTGGCCGT 917028 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 |||||| | || || ||||| || || | || || ||| ||||| || || Sbjct 917027 GTGTAATTTGGCGTCGATCGCCCTTCCAGCCTTCGTTGAGTCCGACGACAATACCAGCTG 916968 Query 112498 -----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | | ||||| || ||| | | || || |||||| || ||||| |||| | Sbjct 916967 GTACAACTTCGAAAAGCTGCACCAGATCACCAAGGTTGTCACTAAGAACCTCAACAAGAT 916908 Query 112553 TATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 || || ||||| | ||| || ||| ||| || | | ||| || ||| | || | | Sbjct 916907 CATCGACAGAAACTATTATCCTGTTCCAGA-GGCAAGAACATCCAACATGCGCAACAGGC 916849 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | |||| | |||||||| || || || || || ||||| | | | | |||| Sbjct 916848 CGATTGCCGTGGGTGTCCAGGGCCTGGCCGACGTGTTCATGCAGCTGAGACTGCCTTTTG 916789 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || || | || | || | || || ||||| || || |||| ||| Sbjct 916788 ACTCACCAGAGGCCAGAGAGCTGAACATCCAGATTTTCGAGACCATCTACCACGGGGCTT 916729 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAG--AGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 | ||||| | | ||| |||| | ||| ||||| ||| || ||||||||||| || Sbjct 916728 TGGAGGCCTCTGCCGAGCTGGCCGTTAGG--GATGGCAAATACGAGACCTTTGAGGGATC 916671 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCAAGC-TTCA 112846 || || || || || | | || || || | || || || || |||| | || Sbjct 916670 GCCGGCGTCGCAGGGTATTTTGCAGTTCGACCTTTGGGGCAA---GAAGCCAACCGATCT 916614 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | ||||||||| | ||||||| || ||| || || | || || | || || || Sbjct 916613 GTGGGACTGGGACTCGCTCAAGGCCCGTATCCAGAAGGATGGACTCAGAAATTCGCTCTT 916554 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | |||| || |||||||| || || || | || || ||||| |||| || || || || Sbjct 916553 GGTGGCTCCTATGCCAACCGCGTCGACATCGCAGATTTTGGGATATAACGAGTGTTTCGA 916494 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 || ||||| | |||||||| |||||| || || || ||||| ||| ||||| Sbjct 916493 GCCTTACACCTCCAACATCTACTCCAGAAGAGTTCTTGCTGGTGAGTTCCAGATCGTCAA 916434 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086 | | | | || ||||| | |||| | ||| | | |||||| || | Sbjct 916433 CCCGTACTTGCTGAGGGACCTTGTTAACCTTGGATTGTGGAACGACTCGATGAAGAATTT 916374 Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 ||| | || | || || || || || | || | ||| | || | ||| | Sbjct 916373 CATCATCAAGGACAACGGCTCGATCCAGAACTTGCCAAATGTGCCACAGGAGTTGAAGGA 916314 Query 113147 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 |||||||||| || ||||| || | ||| | || |||||||| || || | Sbjct 916313 CCTGTACCGCACCGTCTGGGAGATTCCGCAGAAAAGCATTATCGACATGGCGGCCGACAG 916254 Query 113207 TGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGAT 113263 || ||| | ||| || | |||| ||| |||||| | | | | | ||||| || Sbjct 916253 AGG-CGCGTACATCGACC--AGTCGCAGTCGATGAATATCCACCTCAAGAACCCAACCAT 916197 Query 113264 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 | |||| | | || |||||| | || | |||||||| || ||||| || || ||||| Sbjct 916196 GGGCAAGTTGACGTCGATGCACTTCTATGGCTGGAAGAAAGGACTCAAGACCGGCATGTA 916137 Query 113324 TTACCTCCGATCTAAGGC 113341 |||||| || | |||| Sbjct 916136 CTACCTCAGAACCCAGGC 916119 >seq4 Length=1302532 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| ||| ||||| | || ||||| || |||||||| ||||||||||| || || Sbjct 920233 TTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGCTCGTTT 920174 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | |||||||||||| |||| || ||||| ||||| |||||| |||||| Sbjct 920173 GCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCTGACCTTCTCGAACGAG 920114 Query 102294 CTTATCTCTCGTGACGAGGGACTCCA 102319 | |||| | |||||||| || || Sbjct 920113 TTGATCTGCAGAGACGAGGGTCTGCA 920088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742345685040