Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq3 152 6e-32 seq2 122 1e-22 >seq4 Length=1302532 Score = 179 bits (198), Expect = 4e-40 Identities = 406/607 (67%), Gaps = 5/607 (1%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || ||| ||||| || ||| || ||||||||||| | ||||| || || || || || Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | |||||||||||||||||| || || | |||||| || || ||||| || ||||| || Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||| ||||| || || || ||||| ||||| ||||| || || | || || | | Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAACAGGGCTTCCTCGTC 920248 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | |||||| ||| ||||| || ||||||| || | |||||| || ||||| || | Sbjct 920249 GTTGATCCATCTCATGGCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAATGGC 920308 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 || || || || | || | | || || || || | || |||| | ||| Sbjct 920309 GTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAGTA 920368 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 | |||| || || || || || || ||||| || ||||| ||||| | || || | Sbjct 920369 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTCAGG 920428 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 | || || || | | || | |||||||| || || || || || || || ||| Sbjct 920429 AACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGC 920488 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TG-TAT 19432 ||||| || || || || || ||| | | | || | || ||| | || | | Sbjct 920489 AGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGT-TGTCGTTGAGTCTGTTGT 920547 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||| || | | || || || | ||| | ||| || | ||||| || || ||||||| Sbjct 920548 TCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGCCTCTG 920607 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 | || || ||||| | ||| || || | || | ||||| || | ||||| || ||| Sbjct 920608 CCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCTTCTTT 920667 Query 19553 TATTTTC 19559 ||||||| Sbjct 920668 TATTTTC 920674 >seq3 Length=1363476 Score = 152 bits (168), Expect = 6e-32 Identities = 394/587 (67%), Gaps = 26/587 (4%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTA---CCTCATTTGGATTAGTATATTGTAT 47932 |||||| | ||| ||||||| || || ||| ||||||| | || | ||||| | Sbjct 659398 AAGTGCCAAAGAGCCTAGATTGCAGACTGCTGTTTCCTCATTAG-ATGA--ATATTCAAC 659342 Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992 |||||| ||| ||||| | ||||| |||||||||||||| || ||| || Sbjct 659341 GATTTCACAACAGAGATTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTT 659282 Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 || || ||||| ||||| |||| ||||| || || ||||| ||||||| | | || Sbjct 659281 ATTGCAGGCGTCTTTGTAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTAT 659222 Query 48053 AGATTTCCAAACAGTC-CTAGCCTTTA---TAACAGCTCTAGCTTTATTATCATGTTCGT 48108 | | ||| |||| || | |||| | || | | |||| | ||| |||| | Sbjct 659221 CGCATGCCA--CAGTTTCTGGGCTTTCACTTTACGGATATAGCG--ACCCTCACGTTCAT 659166 Query 48109 ATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168 | | | || | ||| |||||||||| ||||| | | | |||||| ||| || Sbjct 659165 ACCTGTTGTAAAGCTTGACAAATTCATCTCCATAAGTGTCACTGAGTCCAGGAGATTGAT 659106 Query 48169 --TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226 | ||| | | | |||| || | ||| || | ||| | |||||| | |||||| Sbjct 659105 CCTCGGAAAAA--AGGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGG 659048 Query 48227 TATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA---CTATTCCT 48283 |||||||||||| ||||||||| |||| | |||||| || ||| | |||| Sbjct 659047 TATCCAAAGAGCATAAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCC- 658989 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA- 48342 | ||| || || || || | | || |||||||| || |||||||| | ||| | | Sbjct 658988 -TCAAG-TCCAGGAACTCAAACACGTCTGCATGCCACGGCTCTAAATACA-TGCAAAAAG 658932 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 | ||||||| |||||| || |||||||| | || | || || ||||| | ||| | Sbjct 658931 CGCCTGGTCTTTTATTTCCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAA 658872 Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||| || |||| || || ||| ||||||| ||||| ||||| ||| Sbjct 658871 TCATAGGCACAAGTCCGTTGGATGTACCATTAGTTCCAGAAATGTAA 658825 >seq2 Length=1516309 Score = 122 bits (134), Expect = 1e-22 Identities = 344/526 (65%), Gaps = 8/526 (2%) Strand=Plus/Plus Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 |||||| | ||||| | |||||||| || | || | || | | || || || || Sbjct 917423 AAAGTCAAAAATATCCGAGTGCCATGGCTCAACGTACAGAGCAAACGCGCCAGGCCGCTT 917482 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || ||||| || || | |||||||| || ||||| | ||||| | |||||| | || Sbjct 917483 GTTGCCTCCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGAT 917542 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 || || || | || |||||||| | || ||| || | | ||| || || ||| Sbjct 917543 GCCGTTGGACGTGCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAAT 917602 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | ||| || || || || || || || |||||||| || ||||| ||||| Sbjct 917603 GTGCAGACCAATGCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATA 917662 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 || || || || || || |||| | | ||||| |||||| |||||||| Sbjct 917663 GATGCCGTCGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATG 917722 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 | ||| || | |||||| | ||||| || || || | || |||| | || | || Sbjct 917723 AGGAGTACCGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAG 917782 Query 48656 TTTATATGTTTCAATAACA----GAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 || || || || || || |||| | ||| | ||| ||||| || | |||| Sbjct 917783 GTTGTACGTCTCGATGACGCTGGGAATGTC-ATCGCC---ATGGATACCAATGGCCACAC 917838 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771 |||| | ||| | || ||||| || | | ||| || || ||||| |||||||| Sbjct 917839 GCATGACCATGTGCTGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACC 917898 Query 48772 TTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 |||| || || || |||||||||||||| |||||||| |||| Sbjct 917899 GCTCCAGCGTCTTGAAGCCAAAATAGTTGTACGAAAAGTCTCTATC 917944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480