Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17]
7 sequences; 8,974,371 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 179 4e-40
seq3 152 6e-32
seq2 122 1e-22
>seq4
Length=1302532
Score = 179 bits (198), Expect = 4e-40
Identities = 406/607 (67%), Gaps = 5/607 (1%)
Strand=Plus/Plus
Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016
|| ||| ||||| || ||| || ||||||||||| | ||||| || || || || ||
Sbjct 920069 CAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGT 920128
Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076
| |||||||||||||||||| || || | |||||| || || ||||| || ||||| ||
Sbjct 920129 CAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 920188
Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136
||| ||||| || || || ||||| ||||| ||||| || || | || || | |
Sbjct 920189 GAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAACAGGGCTTCCTCGTC 920248
Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196
| |||||| ||| ||||| || ||||||| || | |||||| || ||||| || |
Sbjct 920249 GTTGATCCATCTCATGGCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAATGGC 920308
Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256
|| || || || | || | | || || || || | || |||| | |||
Sbjct 920309 GTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAGTA 920368
Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316
| |||| || || || || || || ||||| || ||||| ||||| | || || |
Sbjct 920369 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAACACTTGGCCTCAGG 920428
Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376
| || || || | | || | |||||||| || || || || || || || |||
Sbjct 920429 AACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGC 920488
Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TG-TAT 19432
||||| || || || || || ||| | | | || | || ||| | || | |
Sbjct 920489 AGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGT-TGTCGTTGAGTCTGTTGT 920547
Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492
|||| || | | || || || | ||| | ||| || | ||||| || || |||||||
Sbjct 920548 TCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGAACGAGGCCTCTG 920607
Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552
| || || ||||| | ||| || || | || | ||||| || | ||||| || |||
Sbjct 920608 CCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGACAAACCTTCTTT 920667
Query 19553 TATTTTC 19559
|||||||
Sbjct 920668 TATTTTC 920674
>seq3
Length=1363476
Score = 152 bits (168), Expect = 6e-32
Identities = 394/587 (67%), Gaps = 26/587 (4%)
Strand=Plus/Minus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTA---CCTCATTTGGATTAGTATATTGTAT 47932
|||||| | ||| ||||||| || || ||| ||||||| | || | ||||| |
Sbjct 659398 AAGTGCCAAAGAGCCTAGATTGCAGACTGCTGTTTCCTCATTAG-ATGA--ATATTCAAC 659342
Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992
|||||| ||| ||||| | ||||| |||||||||||||| || ||| ||
Sbjct 659341 GATTTCACAACAGAGATTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTT 659282
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
|| || ||||| ||||| |||| ||||| || || ||||| ||||||| | | ||
Sbjct 659281 ATTGCAGGCGTCTTTGTAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTAT 659222
Query 48053 AGATTTCCAAACAGTC-CTAGCCTTTA---TAACAGCTCTAGCTTTATTATCATGTTCGT 48108
| | ||| |||| || | |||| | || | | |||| | ||| |||| |
Sbjct 659221 CGCATGCCA--CAGTTTCTGGGCTTTCACTTTACGGATATAGCG--ACCCTCACGTTCAT 659166
Query 48109 ATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168
| | | || | ||| |||||||||| ||||| | | | |||||| ||| ||
Sbjct 659165 ACCTGTTGTAAAGCTTGACAAATTCATCTCCATAAGTGTCACTGAGTCCAGGAGATTGAT 659106
Query 48169 --TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226
| ||| | | | |||| || | ||| || | ||| | |||||| | ||||||
Sbjct 659105 CCTCGGAAAAA--AGGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGG 659048
Query 48227 TATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA---CTATTCCT 48283
|||||||||||| ||||||||| |||| | |||||| || ||| | ||||
Sbjct 659047 TATCCAAAGAGCATAAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCC- 658989
Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA- 48342
| ||| || || || || | | || |||||||| || |||||||| | ||| | |
Sbjct 658988 -TCAAG-TCCAGGAACTCAAACACGTCTGCATGCCACGGCTCTAAATACA-TGCAAAAAG 658932
Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402
| ||||||| |||||| || |||||||| | || | || || ||||| | ||| |
Sbjct 658931 CGCCTGGTCTTTTATTTCCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAA 658872
Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449
||| || |||| || || ||| ||||||| ||||| ||||| |||
Sbjct 658871 TCATAGGCACAAGTCCGTTGGATGTACCATTAGTTCCAGAAATGTAA 658825
>seq2
Length=1516309
Score = 122 bits (134), Expect = 1e-22
Identities = 344/526 (65%), Gaps = 8/526 (2%)
Strand=Plus/Plus
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
|||||| | ||||| | |||||||| || | || | || | | || || || ||
Sbjct 917423 AAAGTCAAAAATATCCGAGTGCCATGGCTCAACGTACAGAGCAAACGCGCCAGGCCGCTT 917482
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
|| ||||| || || | |||||||| || ||||| | ||||| | |||||| | ||
Sbjct 917483 GTTGCCTCCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGAT 917542
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|| || || | || |||||||| | || ||| || | | ||| || || |||
Sbjct 917543 GCCGTTGGACGTGCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAAT 917602
Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535
| ||| || || || || || || || |||||||| || ||||| |||||
Sbjct 917603 GTGCAGACCAATGCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATA 917662
Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595
|| || || || || || |||| | | ||||| |||||| ||||||||
Sbjct 917663 GATGCCGTCGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATG 917722
Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655
| ||| || | |||||| | ||||| || || || | || |||| | || | ||
Sbjct 917723 AGGAGTACCGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAG 917782
Query 48656 TTTATATGTTTCAATAACA----GAATCTATATCCCATTGATGTATACCTATAGATACAC 48711
|| || || || || || |||| | ||| | ||| ||||| || | ||||
Sbjct 917783 GTTGTACGTCTCGATGACGCTGGGAATGTC-ATCGCC---ATGGATACCAATGGCCACAC 917838
Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771
|||| | ||| | || ||||| || | | ||| || || ||||| ||||||||
Sbjct 917839 GCATGACCATGTGCTGGGGTCTCTCGGCGACTTTTCCATCAATCTTCAAGAGATATGACC 917898
Query 48772 TTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
|||| || || || |||||||||||||| |||||||| ||||
Sbjct 917899 GCTCCAGCGTCTTGAAGCCAAAATAGTTGTACGAAAAGTCTCTATC 917944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108750815480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |