Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-27 seq2 140 4e-27 seq6 96.9 4e-14 seq5 93.3 5e-13 >seq4 Length=1302532 Score = 140 bits (154), Expect = 4e-27 Identities = 232/330 (70%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 |||| |||||| ||| ||| || | | |||||| |||||||||||||| | || Sbjct 919772 GACGCCCGCCTTCTGGTAATCGGAGACTCTCTTCTCGAAGAAGTTGGTCTTGCCTGCAAG 919831 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 ||||| |||||| | ||||||||| | | ||||||||||| | ||| || || Sbjct 919832 AGAGATGTTCTCCATGAAGTCGAACGGGTTTGTGGCGTTGTAGTGCTTCTTGCAGCCCAG 919891 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 || ||||| ||||| || |||||||| | |||||||||||| ||| | |||||| Sbjct 919892 AGATAAAAGCAGCCGGTCAGCAACAAACTCCACGTACTGGCACATCAGGTTGCAGTTCAT 919951 Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCT-CACAAACTCTTTCTCGATCTCGACGGCCT 868922 || | || || ||||| | ||| | | | |||||| |||||||||||||||| Sbjct 919952 ACCCAGCAGGTTGACAGGCAGGGCGTCGGTGAAGTATCTCTTT-TCGATCTCGACGGCCT 920010 Query 868923 CGACGATGATCTGCCTGGGCAC---GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGA 868979 || |||||||| || |||| |||| || ||||| ||| || | ||| Sbjct 920011 CGGTGATGATCT---TGAGCACGATGTCGCTGTTTGGGGTGTTGTTGAGGTGCGAGAAGA 920067 Query 868980 GCAGGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 |||| |||||||||||| |||| ||||| Sbjct 920068 GCAGACAGGCAAAGTCGGTATGCAGACCCT 920097 Score = 129 bits (142), Expect = 7e-24 Identities = 215/309 (70%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 869158 GGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAG 869217 ||||||| || ||||| ||| ||||| | | ||||| ||||| |||| || Sbjct 920075 GGCAAAGTCGG---TATGCAGACCCTCGTCTCTGCAGATCAACTCGTTCGAGAAGGTCAG 920131 Query 869218 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAA 869277 || ||||| || || | |||||||||||| ||||| | | || ||| ||||| || Sbjct 920132 ACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAGAA 920191 Query 869278 GATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGC--CCTCC 869335 || ||||| ||||| ||||| | | ||| | ||||||||| | ||| |||| Sbjct 920192 AATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAA-----CAGGGCTTCCTCG 920246 Query 869336 TTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 | ||||||||| |||| ||||| |||||||| | | | | | || | || || ||| Sbjct 920247 TCGTTGATCCATCTCATGGCCCATTCGGCCTTCTCCTTGATACATGGGATGGTCTCAATG 920306 Query 869396 GCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAA 869455 ||| || ||| || ||| ||||||||||| |||||||||||||| ||||| Sbjct 920307 GCGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGATCAGAAGCGAG 920366 Query 869456 TAGGTCTCC 869464 || || ||| Sbjct 920367 TACGTTTCC 920375 >seq2 Length=1516309 Score = 140 bits (154), Expect = 4e-27 Identities = 267/394 (68%), Gaps = 17/394 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| || || | | ||| || | || ||||||||| Sbjct 917492 CTGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTCACCATTGGAATGATGCCGTTGGA 917551 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAAAGC 1630183 | ||||||||| || || | ||| | |||| || | | ||||| | ||| | | Sbjct 917552 CGTGCCGTTGGTTCCAGCGATGTAAGACCCGGTGGATCTAATGTTGTGAATGTGCAGA-C 917610 Query 1630184 CGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCT 1630243 | ||||| || || | ||||||||| || || || ||||| ||||| |||||||| | Sbjct 917611 CAATGCCTCCAGCAGCCTTGGAGATCAGAGCACAGGTCTTGAGGGTGTCATAGATGCCGT 917670 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 |||| |||||| |||||||| | || | || || || || | ||||| || | || | Sbjct 917671 CGATGGAGTCGTCCTTCATGGCAACCAAGAAACAGGAAGACATCTGCGGATGAGGAGTAC 917730 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 |||| || || || || |||| ||| |||||| || | ||||||| || ||| | Sbjct 917731 CGGCATTAAACAGAGTTGGCGACGCGTGGGTGAAGAATTTTTGCGACATCAGGTTGTACG 917790 Query 1630364 TGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGA 1630423 | ||| |||| | | ||||| |||| | || ||||| | Sbjct 917791 TCTCGATGACGCTGGGAATGTCATCG---------------CCATGGATACCAATGGCCA 917835 Query 1630424 CGCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 | ||||||| ||||| |||||| | |||| |||| Sbjct 917836 CACGCATGACCATGTGCTGGGGTCTCTCGGCGAC 917869 >seq6 Length=996047 Score = 96.9 bits (106), Expect = 4e-14 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 509048 GGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATG 509107 || |||||||||||||| | | ||| |||| ||| |||| | | | ||| Sbjct 771851 GGGTTTGTGCGCAACTCTTTCTTTTCCGGGCTCAGTCCGCCCGAGTTCCTGTTCCACGCC 771792 Query 509108 ATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 509167 ||| ||| | ||||| || || || ||||| |||||||| || ||||||||||||| | Sbjct 771791 ATCTCCGGCAGAGAGGGGCTAGTGGATACGGCTGTCAAGACCGCAGAGACGGGCTACACC 771732 Query 509168 CAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGC-GCGGCGGCCTCGTGCG 509226 ||| ||| || |||||||||||| |||| || | || || || |||||| Sbjct 771731 TCGCGGCGGCTGATGAAGTCGATGGAGGACCTG-AGTGCCGGCTACGACGAGACCGTGCG 771673 Query 509227 CAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 |||| | | | || |||||| ||||| |||||| |||||||| Sbjct 771672 CAACTCGAGCAACGGCATCGTGCAGTTCAACTATGGAGGCGACGG 771628 >seq5 Length=1266025 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1592174 GAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAG 1592233 ||| | || || || ||||| |||||| |||||||||| ||||| | || |||||| Sbjct 516099 GAGATCATTCTTGCTGCCAATTACCTCAACATCAAGCCGCTGCTGAACGCCGGATGCAAG 516158 Query 1592234 TCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 |||||| | |||||| |||||||| || ||||||||||||||||| || ||||| Sbjct 516159 GTTGTGGCGGAGATGATCCGCGGCAAGTCTCCTGAGGAGATCCGCAAGACTTTCAACAT 516217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138625547219