Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 145 6e-30 seq2 113 3e-20 >seq1 Length=1541475 Score = 145 bits (160), Expect = 6e-30 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | ||| ||||| || | || || ||||| |||||||| ||||| | Sbjct 445976 CCACCTCTCAATCTCAGGACCAAGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCGGAC 446035 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || || || || |||||| | || | ||||||||| || || || Sbjct 446036 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGG 446095 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| || | ||||||| | || | |||||||||| |||||| Sbjct 446096 ATTCCTTCCTTATCTTG-AATCTTCGATTTGACATTATCGATAGTGTCAGAAGATTCTAC 446154 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTA 29797 || | ||| ||||||||||| || || || ||||| || ||||||||||| || |||| Sbjct 446155 CTCTAAAGTGATAGTTTTGCCGGTCAAAGTCTTAACGAAAATCTGCATTTTTAAGCGTA 446213 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | ||| |||| || | || || ||||| |||||||| ||||| | Sbjct 445520 CCACCTCTCAATCTCAGGACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGAC 445579 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || |||||||| || ||||| | |||||||| || ||||| ||||| Sbjct 445580 AGAGTTCTGCCGTCTTCGAGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGGG 445639 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||| || || |||||| | ||| ||| | || | ||||||||| || || Sbjct 445640 ATACCCTCTTTATCCTG-AATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCAAC 445698 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || ||||||||||| || || ||||| Sbjct 445699 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445746 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| | || ||||||||||| || ||||| || |||||||| ||||| | Sbjct 445064 CCACCTCTCAGTCTCAAAACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCGGAC 445123 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || || || || |||||| | || | ||||||||| || || || Sbjct 445124 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGGGGG 445183 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || |||||| | ||||| | || | ||||||||| || || Sbjct 445184 ATTCCTTCCTTATCCTG-AATTTTGGACTTGACGTTATCGATAGTGTCAGAGGACTCAAC 445242 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||| ||||||||||| || || ||||| Sbjct 445243 CTCAAGGGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 445290 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || |||| ||| | || || || |||||||||||||| || | Sbjct 445292 CCACCTCTCAATCTCAAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGAT 445351 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || |||||||| || ||||| | || | ||||||||| || || || Sbjct 445352 AACGTTCTACCGTCTTCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGG 445411 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | |||||| | || | ||||||||| || || Sbjct 445412 ATTCCTTCCTTATCTTG-AATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAAC 445470 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || ||||||||||| || || ||||| Sbjct 445471 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445518 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || |||| || | || || || ||||||||||| ||||| | Sbjct 445748 CCACCTCTCAATCTCAAAACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGAC 445807 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || || || || |||||| | || | ||||||||| || || || Sbjct 445808 AGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGG 445867 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | |||||| | || | ||||||||| || || Sbjct 445868 ATTCCTTCCTTATCTTG-AATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAAC 445926 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || ||||||||||| || || ||||| Sbjct 445927 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445974 >seq2 Length=1516309 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| | ||| |||||||| | ||||| |||||||| ||||| || || | | Sbjct 177337 CCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAA 177396 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || |||||||| || || || | |||||||||||||| || || || Sbjct 177397 AGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGG 177456 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || ||||| | || | ||||| ||| || || Sbjct 177457 ATTCCTTCTTTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCGACC 177516 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || || || || ||||| || || || ||||||||||| Sbjct 177517 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 177566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219167135987