Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 201 2e-46 seq4 187 3e-42 seq3 159 5e-34 >seq2 Length=1516309 Score = 201 bits (222), Expect = 2e-46 Identities = 542/822 (66%), Gaps = 14/822 (2%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 |||| | ||| || || || |||||||| || || || || ||||||| ||| | Sbjct 917331 ACTCTCTCCATGAACAGGTCTGGAATCCACAGCGCAGGGAACAGGTCTCTGGCTCTGATC 917390 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || || || || || | |||| ||| || | |||||| || |||||||| Sbjct 917391 TCCTCCTTACCATGGTTCTTCCGGATGTCGATAAAGTCAAAAATATCCGAGTGCCATGGC 917450 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 || | || | || | | || || || || || |||||||| || | ||||||||| Sbjct 917451 TCAACGTACAGAGCAAACGCGCCAGGCCGCTTGTTGCCTCCCTGGTCGACGTATCTGGCG 917510 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| || | ||||||| ||| ||||| || || || || | || || ||||||| Sbjct 917511 GTGTTGTTGAACACTCTCACCATTGGAATGATGCCGTTGGACGTGCCGTTGGTTCCAGCG 917570 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 || ||| || | | | ||| || ||| ||||| || ||||| || || Sbjct 917571 ATGTAAGACCCGGTGGATCTAATGTTGTGAATGTGCAGACCAATGCCTCCAGCAGCCTTG 917630 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||| || | |||||||| || || || ||| || || ||||| Sbjct 917631 GAGATCAGAGCACAGGTCTTGAGGGTGTCATAGATGCCGTCGATGGAGTCGTCCTTCATG 917690 Query 69955 TTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGA 70014 || | |||||| |||||| || |||| ||| || |||||||| | || || Sbjct 917691 GCAACCAAGAAACAGGAAGACATCTGCGGATGAGGAGTACCGGCATTAAACAGAGTTGGC 917750 Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA--GCTGATTCTA 70072 || ||||| ||||| |||||| || | ||| ||||| || || || |||| | Sbjct 917751 GACGCGTGGGTGAAGAATTTTTGCGACATCAGGTTGTACGTCTCGATGACGCTGGGAATG 917810 Query 70073 T-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACC 70131 | ||| | ||| || || || || |||||||| | ||| ||||| |||| || | Sbjct 917811 TCATCGCC---ATGGATACCAATGGCCACACGCATGACCATGTGCTGGGGTCTCTCGGCG 917867 Query 70132 GTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTG 70191 ||| || || ||||| || ||||| ||||| || || || |||||||||||| Sbjct 917868 ACTTTTCCATCAATCTTCAAGAGATATGACCGCTCCAGCGTCTTGAAGCCAAAATAGTTG 917927 Query 70192 TATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATC--CTTATATTTGGTAA 70249 || ||||||||||| ||||| | || |||| || || | || | | ||| | Sbjct 917928 TACGAAAAGTCTCTATCGTACACTATGGCAGAGTTCAGCTCGTCGGCGTGCTCCTGG--A 917985 Query 70250 CTATATCCATAACAGTAGGT--GAGATAATCGGAGATCGTTTACCATTTTTAGGATTAAC 70307 | |||| || | || ||||| || || || | || ||||| || || || | Sbjct 917986 C--AATCCGGTACGTTTCGTCCGAGATCATTGGCGAAGGCTTGCCATTCTTGGGGTTGAT 918043 Query 70308 ATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATT 70367 ||||| | | | | || | || | ||| | || | |||| |||||| | || Sbjct 918044 ATAGTGGTACAGCTGGTCAACGACCTGGGAAAACTGCTTGGTGGTTTGCTTGTGCAGGTT 918103 Query 70368 TGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 || |||||||||||||| || || | || ||||| ||||| Sbjct 918104 GGAAATGGCTATTCTGGCGGCCAGGGTGGCGTAGTCGGGATG 918145 >seq4 Length=1302532 Score = 187 bits (206), Expect = 3e-42 Identities = 598/918 (65%), Gaps = 15/918 (2%) Strand=Plus/Plus Query 39304 TTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGT 39363 |||||| | ||| || ||| || ||||| || || | |||||||| || || || Sbjct 919761 TTCTTG-GCCATGACGCCCGCCTTCTGGTAATCGGAGACTCTCTTCTCGAAGAAGTTGGT 919819 Query 39364 TTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttt 39423 |||||| | | || || || |||||||| || ||||| || || || || || | || Sbjct 919820 CTTGCCTGCAAGAGAGATGTTCTCCATGAAGTCGAACGGGTTTGTGGCGTTGTAGTGCTT 919879 Query 39424 tttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT 39483 || | || | | ||| || | || |||||||| || | ||| ||||| Sbjct 919880 CTTGCAGCCCAGAGATAAAAGCAGCCGGTCAGCAACAAACTCCACGTACTGGCACATCAG 919939 Query 39484 TTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTA-GAAACTCTTTTTCGA 39542 | || ||||| || | || || || || || || || || | | | ||||||| ||| Sbjct 919940 GTTGCAGTTCATACCCAGCAGGTTGACAGGCAGGGCGTCGGTGAAGTATCTCTTTT-CGA 919998 Query 39543 TGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA-TGCAATAAA 39601 | || |||||||| || || ||| | | || || || ||| || | | Sbjct 919999 TCTCGACGGCCTCGGTGATGATCT---TGAGCACGATGTCGCTGTTTGGGGTGTTGTTGA 920055 Query 39602 TGTTTAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATT 39659 || | | | | ||||| ||||| ||| || ||||| ||||| | || || | Sbjct 920056 GGTGCGAGAAGAGCAGACAGGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAACT 920115 Query 39660 CGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAA 39719 |||| || || || || |||||||| || || | ||| |||||||| || || | |||| Sbjct 920116 CGTTCGAGAAGGTCAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGCAA 920175 Query 39720 AAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC 39779 | || ||||| ||||| || || || || || ||||| ||||| |||||||| | | Sbjct 920176 ACGAGCCAGAGAAGAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGCAAACA 920235 Query 39780 TTGTATCATTAT-GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCA 39836 | || | | || ||||| || ||||| || || |||| ||| | ||| || | Sbjct 920236 GGGCTTCCTCGTCGTTGATCCATCTCATGGCCCATTCGGCCTTCTCCTTGATACATGGGA 920295 Query 39837 TTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTA 39896 | || || || || || || || | | ||| | | || || || || || || | Sbjct 920296 TGGTCTCAATGGCGTTGAAAAGGAACTCAGCTTCCTTAGGGTCCTTGACGTAGGTGTCGA 920355 Query 39897 TTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAAC 39956 | | || ||| |||| || |||||||| || ||| ||||| || ||||| |||| Sbjct 920356 TCAGAAGCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCGTAGAAAC 920415 Query 39957 ATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTA 40016 | | || |||| || ||| ||||| | | | || | || |||| || || || || | Sbjct 920416 ACTTGGCCTCAGGAACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAA 920475 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTG 40076 | || || ||| ||||| || ||||| || || ||| ||| | || | | Sbjct 920476 TGCCGTCCGAAGCAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCGTTGTCGT 920535 Query 40077 TCAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 40133 | | | || |||||||| | | || || || | ||| | ||| || || ||||| | Sbjct 920536 TGAGTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCGGTCCAGA 920595 Query 40134 ACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAA 40193 |||| ||||||||||| |||||||| | ||| || || | || | || || || | | Sbjct 920596 ACGAGGCCTCTGCCTTCTTGTACATCTGCCAAATCTCGTGGTACTTGATAGGGAACAAGA 920655 Query 40194 CAAATCTATTTGGATTTT 40211 |||| || || ||||| Sbjct 920656 CAAACCTTCTTTTATTTT 920673 >seq3 Length=1363476 Score = 159 bits (176), Expect = 5e-34 Identities = 393/583 (67%), Gaps = 20/583 (3%) Strand=Plus/Minus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTA---CCTCATTAGAATTTGCATATTGTATT 69324 ||||| | ||| ||||||| || |||||| |||||||||| || ||||| | Sbjct 659397 AGTGCCAAAGAGCCTAGATTGCAGACTGCTGTTTCCTCATTAGA---TGAATATTCAACG 659341 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||| ||||| | ||||| || |||| ||||||||| ||| |||||| Sbjct 659340 ATTTCACAACAGAGATTGGATGACTTGATGGTACCCAAATTTTGCTGGTTAGACTTTTTA 659281 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || |||||||| ||||| || | || || || || ||||| ||||||| | | || Sbjct 659280 TTGCAGGCGTCTTTGTAGAGCAGGAAAGGGGTCCCTGTTTCCGTCTGAGAAACTAGTATC 659221 Query 69445 GATTTCCAAACGACCCTAGCATTTA--TTACGGTCTTGTAACGCTTCTCTTTTTCATAT- 69501 | | ||| | | || || | |||||| | || || ||| |||||| Sbjct 659220 GCATGCCACAGTTTCTGGGCTTTCACTTTACGGA--TATAGCGACCCTCACGTTCATACC 659163 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCAT-- 69559 ||| | || ||| | ||||||||||| || ||| | ||||||| ||| || Sbjct 659162 TGT-TGTAAAGCTTGACAAATTCATCTCCATAAGTGTCACTGAGTCCAGGAGATTGATCC 659104 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 | ||| | | | ||||| | | ||| | || ||| | |||||| | ||| || | Sbjct 659103 TCGGAAAAA--AGGCACCACTCTTGATCTTTCTCGACTTTCTCCATAAACAAATCTGGTA 659046 Query 69620 TCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttA 69678 |||||||||| ||| | |||||| | | | ||||||| ||||| || |||| | | Sbjct 659045 TCCAAAGAGCATAAAATAAATCTCTAGCGCGAGTTTCTTCCTTTCCATGGTTTTTCCTCA 658986 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA-CTCC 69737 || || || ||||| | | || | |||||| || |||| ||| || || | | | || Sbjct 658985 AG-TCCAGGAACTCAAACACGTCTGCATGCCACGGCTCTAAATACAT-GCAAAAAGCGCC 658928 Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797 |||| ||||||||| || ||||| | ||| | || ||| | ||| ||||| | ||| Sbjct 658927 TGGTCTTTTATTTCCACCTTGATCCACGTACTTTGCGGTGCTGTTAAAGACTTGAATCAT 658868 Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | || || || ||| ||||||| ||||||||||| ||| Sbjct 658867 AGGCACAAGTCCGTTGGATGTACCATTAGTTCCAGAAATGTAA 658825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908739895480