Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 246 4e-60 seq4 96.9 4e-15 >seq2 Length=1516309 Score = 246 bits (272), Expect = 4e-60 Identities = 1124/1758 (64%), Gaps = 47/1758 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| |||||||| ||||| ||||| || |||||| ||| Sbjct 917857 CCCCAGCACATGGTCATGCGTGTGGCCATTGGTATCCATGGCGATGACATTCCCAGCGTC 917798 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || |||||| ||| | |||| ||||| | ||||| || || Sbjct 917797 ATCGAGACGTACAACCTGATGTCGCAAAAATTCTTCACCCACGCGTCGCCAACTCTGTTT 917738 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| ||||| || || || ||||| || ||| | | |||| ||||| ||| Sbjct 917737 AATGCCGGTACTCCTCATCCGCAGATGTCTTCCTGTTTCTTGGTTGCCATGAAGGACGAC 917678 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| |||| ||||||| || || | | ||||| | ||||| ||| ||||| Sbjct 917677 TCCATCGACGGCATCTATGACACCCTCAAGACCTGTGCTCTGATCTCCAAGGCTGCTGGA 917618 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || ||||| ||||||| || | | ||| ||| ||| || || || || Sbjct 917617 GGCATTGGTCTGCACATTCACAACATTAGATCCACCGGGTCTTACATCGCTGGAACCAAC 917558 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || || | || || ||||||||| | | || || ||| ||| || | || || Sbjct 917557 GGCACGTCCAACGGCATCATTCCAATGGTGAGAGTGTTCAACAACACCGCCAGATACGTC 917498 Query 104582 AATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGTCTATCT------TGAGCCATGGCA 104634 | || ||| | | | ||| | || ||| | ||| |||||||||||| Sbjct 917497 GACCA----GGGAGGCAACAAGCGGCCTGGCGCGTTTGCTCTGTACGTTGAGCCATGGCA 917442 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | ||||||| | || || | || | || ||||| ||| | |||||| | | | Sbjct 917441 CTCGGATATTTTTGACTTTATCGACATCCGGAAGAACCATGGTAAGGAGGAGAT-CAGAG 917383 Query 104695 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 || | || || ||| | || || ||||||||||| || |||||| ||||||| ||| ||| Sbjct 917382 CCAGAGACCTGTTCCCTGCGCTGTGGATTCCAGACCTGTTCATGGAGAGAGTCGAGCAGA 917323 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG---G 104810 | | ||| | || || | || | |||| || || || ||||| |||| | Sbjct 917322 ACGCTGAGTGGACGCTGTTCTCGCCTTCCGAGGCTCCAGGGCTTTCCGA---CGTGTACG 917266 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-GACG 104869 | || ||||| | | || ||||| | ||||| | ||||| || | ||| | |||| Sbjct 917265 GCGACGAGTTCAAGGAGCTCTACACCAGATACGAAAAGGAAGGCCGTG-GACGCCAGACG 917207 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || | || | || | ||||| | || ||| | || | || || || || || || || Sbjct 917206 GT-CAAGGCACAGAAGCTGTGGTACGCCATTTTGGAGGCCCAGACGGAAACAGGCACGCC 917148 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 || |||||| ||||| |||||||| ||| |||| || || ||||| | ||| | || Sbjct 917147 ATTCATGCTGTACAAGGACGCCTGCAACTCCAAGACCAACCAGAAGAACCTTGGTATCAT 917088 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||| || ||| | || ||||| | || | || ||| ||| ||| || Sbjct 917087 CAAGTCGTCTAATTTGTGCTGCGAAATTGTCGAGTACTCATCTCCAGAGGAGGTGGCCGT 917028 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 |||||| | || || ||||| || || | || || ||| ||||| || || Sbjct 917027 GTGTAATTTGGCGTCGATCGCCCTTCCAGCCTTCGTTGAGTCCGACGACAATACCAGCTG 916968 Query 105108 -----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | | ||||| || ||| | | || || |||||| || ||||| |||| | Sbjct 916967 GTACAACTTCGAAAAGCTGCACCAGATCACCAAGGTTGTCACTAAGAACCTCAACAAGAT 916908 Query 105163 TATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 || || ||||| | ||| || ||| ||| || | | ||| || ||| | || | | Sbjct 916907 CATCGACAGAAACTATTATCCTGTTCCAGA-GGCAAGAACATCCAACATGCGCAACAGGC 916849 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 105281 | |||| | ||||| ||||| || || || || ||||| | | | | |||| Sbjct 916848 CGATTGCCGTGGGTGTCCAGGGCCTGGCCGACGTGTTCATGCAGCTGAGACTGCCTTTTG 916789 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || | || | || | || || |||||||| || |||| ||| Sbjct 916788 ACTCACCAGAGGCCAGAGAGCTGAACATCCAGATTTTCGAGACCATCTACCACGGGGCTT 916729 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAG--AGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | ||||| | | ||| |||| | ||| ||||| ||| || ||||||||||| || Sbjct 916728 TGGAGGCCTCTGCCGAGCTGGCCGTTAGG--GATGGCAAATACGAGACCTTTGAGGGATC 916671 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGACCAAGC-TTCA 105456 || || || || || | | || || || | || || || || |||| | || Sbjct 916670 GCCGGCGTCGCAGGGTATTTTGCAGTTCGACCTTTGGGGCAA---GAAGCCAACCGATCT 916614 Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | |||||||| | ||||||| || ||| || || | || || | || ||| | Sbjct 916613 GTGGGACTGGGACTCGCTCAAGGCCCGTATCCAGAAGGATGGACTCAGAAATTCGCTCTT 916554 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 ||||||| |||||||| || || || | || || ||||| |||| || || || || Sbjct 916553 GGTGGCTCCTATGCCAACCGCGTCGACATCGCAGATTTTGGGATATAACGAGTGTTTCGA 916494 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || ||||| | |||||||| |||||| || || || ||||| ||| ||||| Sbjct 916493 GCCTTACACCTCCAACATCTACTCCAGAAGAGTTCTTGCTGGTGAGTTCCAGATCGTCAA 916434 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696 | | | | || ||||| | |||| | ||| | | |||||| || | Sbjct 916433 CCCGTACTTGCTGAGGGACCTTGTTAACCTTGGATTGTGGAACGACTCGATGAAGAATTT 916374 Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756 ||| | || | || || || || || | || | ||| | || | ||| | Sbjct 916373 CATCATCAAGGACAACGGCTCGATCCAGAACTTGCCAAATGTGCCACAGGAGTTGAAGGA 916314 Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816 |||||||||| || ||||| || | ||| | || |||||||| || || | Sbjct 916313 CCTGTACCGCACCGTCTGGGAGATTCCGCAGAAAAGCATTATCGACATGGCGGCCGACAG 916254 Query 105817 TGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGAT 105873 || ||| | ||| || | |||| ||| |||||| || | | | | ||||| || Sbjct 916253 AGG-CGCGTACATCGACC--AGTCGCAGTCGATGAATATCCACCTCAAGAACCCAACCAT 916197 Query 105874 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 105933 | |||| | | || |||||| | || | |||||||| || ||||| || || ||||| Sbjct 916196 GGGCAAGTTGACGTCGATGCACTTCTATGGCTGGAAGAAAGGACTCAAGACCGGCATGTA 916137 Query 105934 TTACCTCCGATCTAAGGC 105951 |||||| || | |||| Sbjct 916136 CTACCTCAGAACCCAGGC 916119 >seq4 Length=1302532 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| ||| ||||| | || ||||| || |||||||| ||||||||||| || || Sbjct 920233 TTTGCCGAGAGACTCGTTGCGTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGCTCGTTT 920174 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | |||||||||||| |||| || ||||| ||||| |||||| |||||| Sbjct 920173 GCCTCGATCTTCTGGCTCAAGAAGAGAGGACTGATGCCTGGTCTGACCTTCTCGAACGAG 920114 Query 94918 CTTATCTCTCGTGACGAGGGACTCCA 94943 | |||| | |||||||| || || Sbjct 920113 TTGATCTGCAGAGACGAGGGTCTGCA 920088 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 154099 AGGTGTGTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGT 154158 |||| ||| || || ||||| || || ||||| || || || |||||||| || | Sbjct 149013 AGGTACGTACGGACGCGTTGCTCCTCGTTCTGGACTTGCAGTCAAACATGGGATTTCAAC 149072 Query 154159 TGGTGCGGGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCA 154218 ||||| || || ||||| | ||||| || ||||| ||||||||||||||||| || Sbjct 149073 AGGTGCCGGAGTCATTGATGCTGACTATCGTGGAGAAGTGAAAGTCGTTCTTTTCAACCA 149132 Query 154219 CGGAGACAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGA 154277 | ||||||||||| | || ||||| ||||| ||||| ||| | || |||| Sbjct 149133 CTCCAGTAAAGACTTTGAAATCAACGAAGGTGACCGCATTGCACAGCTTATACTCGAGA 149191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260748964680