Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 235 6e-57 seq4 131 2e-25 seq3 86.0 7e-12 >seq2 Length=1516309 Score = 235 bits (260), Expect = 6e-57 Identities = 515/766 (67%), Gaps = 4/766 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | |||||||| || || ||| | | ||| ||||||||| Sbjct 917844 TCATGCGTGTGGCCATTGGTATCCATGGCGATGACATTCCCAGCGTCATCGAGACGTACA 917785 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| ||||| | ||| || ||||| ||||||| ||||| || || ||||| Sbjct 917784 ACCTGATGTCGCAAAAATTCTTCACCCACGCGTCGCCAACTCTGTTTAATGCCGGTACTC 917725 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| || |||||||| ||| ||| |||| || |||||||| ||||| |||||||||| Sbjct 917724 CTCATCCGCAGATGTCTTCCTGTTTCTTGGTTGCCATGAAGGACGACTCCATCGACGGCA 917665 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || |||||| ||||| | ||||||||| | || || || ||| | | Sbjct 917664 TCTATGACACCCTCAAGACCTGTGCTCTGATCTCCAAGGCTGCTGGAGGCATTGGTCTGC 917605 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | | | ||| | | | | ||| | ||| || || |||||| || | Sbjct 917604 ACATTCAC-AACATTAGATCCACCGGGTCTTACATCGCTGGAACCAACGGCACGTCCAAC 917546 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||| | || ||| | | || ||||||||||| ||| | |||||| ||||||| || Sbjct 917545 GGCATCATTCCAATGGTGAGAGTGTTCAACAACACCGCCAGATACGTCGACCAGGGAGGC 917486 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || |||| || | ||| | ||||| |||||| | || ||| | || Sbjct 917485 AACAAGCGGCCTGGCGCGTTTGCTCTGTACGTTGAGCCATGGCACTCGGATATTTTTGAC 917426 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 ||| |||| | || ||| || ||| | || ||||| | | | |||||||| | Sbjct 917425 TTTATCGACATCCGGAAGAACCATGGTAAGGAGGAGATCAGAGCCAGAGACCTGTTCCCT 917366 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || ||||||||||| ||||| |||||| | | || ||| || ||| |||||| ||| Sbjct 917365 GCGCTGTGGATTCCAGACCTGTTCATGGAGAGAGTCGAGCAGAACGCTGAGTGGACGCTG 917306 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 | | || |||| || || || | || ||||| || ||||| || ||| | Sbjct 917305 TTCTCGCCTTCCGAGGCTCCAGGGCTTTCCGACGTGTACGGCGACGAGTTCAAGGAGCTC 917246 Query 53792 TATCGGACGTACGCAGTTCAGGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTGAGGTATG 53850 || | |||| | | ||||| | | | ||| ||||||||| | || | || Sbjct 917245 TACACCAGATACGAAAAGGAAGGCCG-TGGACGCCAGACGGTCAAGGCACAGAAGCTGTG 917187 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | | || || | || |||| ||| || || ||||| | |||| |||||||| | Sbjct 917186 GTACGCCATTTTGGAGGCCCAGACGGAAACAGGCACGCCATTCATGCTGTACAAGGACGC 917127 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 |||| |||| ||||||||||||| | || ||||||| ||| Sbjct 917126 CTGCAACTCCAAGACCAACCAGAAGAACCTTGGTATCATCAAGTCG 917081 Score = 158 bits (174), Expect = 1e-33 Identities = 544/842 (65%), Gaps = 16/842 (2%) Strand=Plus/Minus Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157 |||| || ||||| ||| | | || ||||| ||| |||||| ||| | |||||| Sbjct 916962 ACTTCGAAAAGCTGCACCAGATCACCAAGGTTGTCACTAAGAACCTCAACAAGATCATCG 916903 Query 55158 ACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCG 55217 ||| || || || || | || ||| | | |||||| | || || |||| || | Sbjct 916902 ACAGAAACTATTATCCTGTTCCAGAGGCAAGAACATCCAACATGCGCAACAGGCCGATTG 916843 Query 55218 CCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCGG 55277 || | ||||| |||||| |||||||| | |||||| ||| || |||| || ||||| Sbjct 916842 CCGTGGGTGTCCAGGGCCTGGCCGACGTGTTCATGCAGCTGAGACTGCCTTTTGACTCAC 916783 Query 55278 AACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAG 55336 | || |||| | ||| | || ||| || | ||||||| | || | ||| Sbjct 916782 CAGAGGCCAGAGAGCTGAACATCCAGATTTTCGAGAC-CATCTACCACGGGGCTTTGGAG 916724 Query 55337 GAGTCGTGTC-ATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395 | || || | | ||||| | || || || | |||||||| || | ||||| || Sbjct 916723 GCCTC-TGCCGAGCTGGCCGTTAGGGATGGCAAATACGAGACCTTTGAGGGATCGCCGGC 916665 Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTG-ACCCCATGTTTG------ 55448 |||| || | |||||||| || ||||||||| | || || | || Sbjct 916664 GTCGCAGGGTATTTTGCAGTTCGACCTTTGGGGCAAGAAGCCAACCGATCTGTGGGACTG 916605 Query 55449 --ACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 || | | ||| || || | || || | || || || | ||||| || Sbjct 916604 GGACTCGCTCAAGGCCCGTATCCAGAAGGATGGACTCAGAAATTCGCTCTTGGTGGCTCC 916545 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||||||||||||||| | ||||| |||| | |||||| |||||||| ||||| Sbjct 916544 TATGCCAACCGCGTCGACATCGCAGATTTTGGGATATAACGAGTGTTTCGAGCCTTACAC 916485 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626 ||||||||||| | | || || |||||||| || ||||| | || | Sbjct 916484 CTCCAACATCTACTCCAGAAGAGTTCTTGCTGGTGAGTTCCAGATCGTCAACCCGTACTT 916425 Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCG 55686 | | |||||| || | ||||||| ||| |||| || | Sbjct 916424 GCTGAGGGACCTTGTTAACCTTGGATTGTGGAACGACTCGATGAAGAATTTCATCATCAA 916365 Query 55687 GAACGGGGGGTCCGTCCAGAATCTGGAGATT---CCTCTGCGTCTCAAGGAGATTTACCG 55743 | || || || ||||||| || | | || | | | ||||| | ||||| Sbjct 916364 GGACAACGGCTCGATCCAGAACTTGCCAAATGTGCCACAGGAGTTGAAGGACCTGTACCG 916305 Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 || || ||||||||||| ||||| || | || |||||| || || | || ||||| Sbjct 916304 CACCGTCTGGGAGATTCCGCAGAAAAGCATTATCGACATGGCGGCCGACAGAGGCGCGTA 916245 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 |||||||||||| ||||| |||| ||| | | |||| || | ||| |||||||| Sbjct 916244 CATCGACCAGTCGCAGTCGATGAATATCCACCTCAAGAACCCAACCATGGGCAAGTTGAC 916185 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||| || || |||||||| ||||||||||| || |||||||| || | || Sbjct 916184 GTCGATGCACTTCTATGGCTGGAAGAAAGGACTCAAGACCGGCATGTACTACCTCAGAAC 916125 Query 55924 CC 55925 || Sbjct 916124 CC 916123 >seq4 Length=1302532 Score = 131 bits (144), Expect = 2e-25 Identities = 364/548 (66%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788 ||||| ||| | ||| | || |||||| || |||| || || ||||||| ||||| Sbjct 920055 AGGTGCGAGAAGAGCAGACA-GGCAAAGTCGGTATGCAGACCCTCGTCTCTGCAGATCAA 920113 Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT---GGC 74845 || ||||| || | || |||||||| ||||| | |||||| | ||| ||||| ||| Sbjct 920114 CTCGTTCGAGAAGGTCAGACCAGGCATCAGTCCTCTCTTCTTGAGCCAGAAGATCGAGGC 920173 Query 74846 ACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGC 74905 | || || ||| |||||| || || || || ||||| || || || | | || Sbjct 920174 A---AACGAGCCAGAGAAGAAAATACCCTCCACGGCAGCAAACGCAACGAGTCTCTCGGC 920230 Query 74906 GAACGGTGCATCG--GAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC 74962 ||| | || || | || ||||| || |||||||| || || |||| Sbjct 920231 AAACAGGGCTTCCTCGTCGTTGATCCATCTCATGGCCCATTCGGCCTTCTCCTTGATACA 920290 Query 74963 AGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020 |||| || || || || | ||| ||| || |||| ||| ||| ||||||||| Sbjct 920291 TGGGATGGTCTCAATGGCGTTGAAAAGGAACTCAGCTTC-CTTAGGG-TCCTTGACGTAG 920348 Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCG 75080 |||| |||| ||| |||||||| ||||| || || ||| | | |||| || || Sbjct 920349 GTGTCGATCAGAAGCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAACCCG 920408 Query 75081 TAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCC 75140 |||||| || ||||| | || || || || || || ||| | | | ||||| Sbjct 920409 TAGAAACACTTGGCCTCAGGAACTTGCACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCG 920468 Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200 |||| ||||||||||| || || || || |||| || | | ||||| | ||| Sbjct 920469 TTGACAATGCCGTCCGAAGCAGCAAAGAAGGCCAACACTCTCGAAACAAAGTATCTCTCG 920528 Query 75201 TCGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 | ||| ||||| |||| ||| || | ||||||| | || ||| || ||||| | Sbjct 920529 TTGTCGTTGAGTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGATCGATTTCCTCTGCG 920588 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 920589 GTCCAGAA 920596 >seq3 Length=1363476 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT-CTGATTGACATGAGT 55786 ||||||| || || ||||| ||||| |||| || | ||| || || || ||| | Sbjct 660081 TCAAGGAAATATATAAAACGGTTTGGGAAATTCAGCA-ACGAGCACTTATAGATATGGCT 660139 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||| | ||| ||| |||||||||||| ||||| | |||||| |||||| Sbjct 660140 GCAGACCGTGCTCCGTTCATTGACCAGTCCCAGAGCATGAACCTATTCATGCGGAATCCG 660199 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | || |||| ||| | ||||||||||| | ||||||| || | || || || Sbjct 660200 ACCATGTCCAAACTGACCAGCATGCACTTTTATGCATGGAAGAGAGGGTTGAAAACAGGC 660259 Query 55907 ATGTACTATCTGCGGACCC 55925 || || ||| |||| |||| Sbjct 660260 ATCTATTATTTGCGAACCC 660278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215952118600