Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 170 4e-37 seq2 165 2e-35 seq1 152 1e-31 seq6 113 1e-19 >seq7 Length=988507 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| ||||| | ||||||||| || |||||||| || || | ||| || || Sbjct 50086 AGTCTGAGGACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTG 50145 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || |||||||| || ||||| || || | ||| |||||||| || | ||| ||| Sbjct 50146 CCGTCCTCGAGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATTCCCTCC 50205 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || ||||| ||||||||||| || || |||||||| ||| Sbjct 50206 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 50265 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| || || || ||||| || || | |||||| || Sbjct 50266 ATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATTGTA 50307 >seq2 Length=1516309 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || | ||||||||||||||||||||| || || | |||||| || Sbjct 177346 AGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAAAGGGTTCTG 177405 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| || |||||||| | | ||| ||||||||||| | |||||| Sbjct 177406 CCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGGATTCCTTCT 177465 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || ||||| ||||||||||| || || ||||| | ||| Sbjct 177466 TTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCGACCTCCAAGGTG 177525 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| || | ||||| || || | ||||||||| Sbjct 177526 ATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 177566 >seq1 Length=1541475 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | || |||||||| || ||||| ||||| | || || || || Sbjct 445987 TCTCAGGACCAAGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCGGACAGAGTTCTACC 446046 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| |||||||| || || || || || | ||| ||||||||||| | ||||||||| Sbjct 446047 GTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTT 446106 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| ||| || || ||||| |||||||| ||| ||||| | |||||| Sbjct 446107 ATCTTGAATCTTCGATTTGACATTATCGATAGTGTCAGAAGATTCTACCTCTAAAGTGAT 446166 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || | |||||| || || | ||||||||| Sbjct 446167 AGTTTTGCCGGTCAAAGTCTTAACGAAAATCTGCATTTT 446205 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| | || ||||| ||||| ||||| ||||| | || || || || ||||| Sbjct 445766 ACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGACAGAGTTCTACCGTCTTCT 445825 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || || || || | ||| ||||||||||| | ||||||||| || || Sbjct 445826 AGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTTATCTTGA 445885 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || || || ||||| ||||||||| |||||||| || ||||| |||||| Sbjct 445886 ATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTT 445945 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | || || || || | ||||| Sbjct 445946 CCGGTCAAGGTTTTAACGAAAATTTGCAT 445974 >seq6 Length=996047 Score = 113 bits (124), Expect = 1e-19 Identities = 392/600 (65%), Gaps = 15/600 (3%) Strand=Plus/Plus Query 139431 AATGTTGACCAACGAACATGGTACAGCCTCAAACATTAAGTCGCGAGTCAACAGGCTTTC 139490 |||||||||| | ||| ||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 696878 AATGTTGACCGATGAATATGGTACAGCCTCCAATATTAAATCGCGTGTCAACAGACTTTC 696937 Query 139491 TGTTCTTGGGGCGATCGTCTCTTGCCAGCAAAAGTTAAAACTTTTACGGGAC-GTCCCAA 139549 ||| ||| || ||| || ||||||||| || |||| ||||| | | || || | Sbjct 696938 TGTGCTTTCTGCCATCACGTCGACCCAGCAAAAATTGAAAC-TTTACAGCTCTGTTCCTA 696996 Query 139550 AGAACGGACTTGTAATTTTTAGCGGAAGTGTTATGCTTCCCG---AAGGCAAGGAGAAAA 139606 | |||||||| || || | | || |||| | ||| |||| || ||||| | Sbjct 696997 AAAACGGACTGGTTATCTACTGTGGTGAAGTTA---TCACCGAACAAGGTAAAGAGAAGA 697053 Query 139607 AGGTTG--CATTCGACATTGAACCTTTCCGTCCAATCAGCCAGAAAGTTTACGCATGCGA 139664 | ||| |||| | | || |||||| || || | | | ||| ||||| Sbjct 697054 A-ATTGACCATT-GGTTTCGAGCCTTTCAAGCCCATTAATACGTCTTTGTACCTGTGCGA 697111 Query 139665 CAGTGTTTTCCATACGGATTGTCTGAAAGATCTGTTGTATGATGACCAATCTTATGGTTT 139724 || |||||||| || || || ||||| | |||| | | || || Sbjct 697112 CAACAAGTTCCATACCGAGGCGCTTTCTGAGTTGTTGGAGAGTGACGATAGATTCGGGTT 697171 Query 139725 TATTATCGTGGATGGCTCCGGTGTTTTATTTGCGACTCTTTCAGGAAGTACAAGAACAAC 139784 ||| || |||| || ||| | ||| |||| || || | || | || ||| | Sbjct 697172 CATTGTCATGGACGGTAACGGAGCTTTGTTTGGTACGCTCTGTGGCAACACCAGAGAAGT 697231 Query 139785 AATCTCGAGTTTCCAAGTTTGCCTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCT 139844 | | ||| ||| |||||||||||||||||||||||| || |||||||| | Sbjct 697232 GTTGCACAAATTCACAGTCGACCTTCCAAAGAAGCACGGAAGAGGTGGTCAATCTGCATT 697291 Query 139845 GCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAA 139904 |||||| ||| | || | ||||| || ||||| || | ||||| || || ||| Sbjct 697292 GCGTTTCTCGAGATTGAGAGATGAAAAAAGACACAATTATGTTAGAAAGGTGGCCGAGGT 697351 Query 139905 CGCAATACAGTGTTTTATCAAAGACAACAAGTGTTTTGTTTCTGGTATTG-TTTTGGCAG 139963 || | ||| ||| |||| | ||||| ||| | || |||| ||||||||| Sbjct 697352 GGCTGTTCAGAATTTCATCACCGGAGACAAGGTCAACGTTGCCGG-ATTGATTTTGGCAG 697410 Query 139964 GTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCTGACTTTTTTGACCCGAGGCT-CAAG 140022 || || || |||||||| |||| ||||||| | || || | |||||| |||| Sbjct 697411 GTAGTGCCGATTTCAAGACGGAGCTGAGTAGATCTGACATGTTCGATCAGAGGCTGCAAG 697470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151896038555