Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 187 5e-42 seq7 161 2e-34 seq1 143 6e-29 >seq2 Length=1516309 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||| | || |||| ||| || ||| |||||||||||||||||||| | Sbjct 177336 ACCACCTCTCAGTCTCAGAACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGA 177395 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||| ||||| ||||| || ||||| |||||||| | ||| |||||| || Sbjct 177396 AAGGGTTCTGCCGTCCTCGAGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGG 177455 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||||||||| | || ||| ||||||| ||||| |||| ||||| Sbjct 177456 GATTCCTTCTTTGTCTTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCGAC 177515 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 177516 CTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 177566 >seq7 Length=988507 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||| | || ||||| || || ||| || || |||||||||||||||| Sbjct 50076 ACCACCTCTCAGTCTGAGGACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGA 50135 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||| ||||| || || || || || || |||| | ||| |||||| || Sbjct 50136 AAGAGTTCTGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGG 50195 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 50196 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 50255 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| |||||||| |||| ||||| ||||| || |||||| Sbjct 50256 CTCGAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATT 50304 Score = 86.0 bits (94), Expect = 1e-11 Identities = 180/268 (67%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 316573 ttCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTAATGG 316632 || || || ||||||| || || || || | | ||| ||| ||| ||| || || Sbjct 786322 TTGACAAACTCGGACAAGTTGCCCTTGTAGTACACCAGTTTCTTGTT---TTCATAGTGT 786378 Query 316633 ATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACATGAA 316692 |||| ||| ||||||| || | || ||||||||||| || ||||||| | | | Sbjct 786379 ATGACGTCAGTGCAGACAGTGTCCAAAAATCCAGAATCGTGCGAAACAATCAGAGACGTG 786438 Query 316693 ACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGG 316752 | || | | | || || || || ||||| ||||||| || ||| |||||| Sbjct 786439 ATATCTGTGTGCTGAACTAGGTAATCTTCAAGCCATTTCACATTGGAAACATCCAGATGG 786498 Query 316753 TTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCA 316812 ||||| || ||||| || || || | | || | || ||||| || | || || || Sbjct 786499 TTGGTTGGCTCGTCGAGAAGCAGAACGTCAGCCTTCATAAGCATGGCTCTCGCAAGTTCA 786558 Query 316813 AGCTTCATTTTCCACCCCCCGGAAAGAG 316840 |||||||| ||||| || || || |||| Sbjct 786559 AGCTTCATCTTCCATCCTCCTGAGAGAG 786586 >seq1 Length=1541475 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || |||||||| || | || || | || || ||||| || || || ||||| Sbjct 446012 TCTTTCTGAATGTTGTAATCGGACAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAA 446071 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||| |||||| || || || ||||| ||||| ||||| | ||| || || Sbjct 446072 ATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTTATCTTGAATCTTCGATTTGACATTA 446131 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| || || | |||||| || || || ||||||||||||||| Sbjct 446132 TCGATAGTGTCAGAAGATTCTACCTCTAAAGTGATAGTTTTGCCGGTCAAAGTCTTAACG 446191 Query 283089 AATATCTGCATTTT 283102 || ||||||||||| Sbjct 446192 AAAATCTGCATTTT 446205 Score = 143 bits (158), Expect = 6e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 316977 GGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTC-GTCGGGAACC 317035 ||| ||||| | ||| ||||||||||| ||||| | | | | | ||| || ||||| | Sbjct 485000 GGAACCGTCAATGTCGTGCTCAACATAGACAGTTCT-ACATTCTTCTTGAGTTGGGAAAC 484942 Query 317036 CTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGC 317095 |||| | |||||||| |||| ||||||||||| || ||||| |||||||| || || | Sbjct 484941 CTTCGACTTGACCGTTGGCAATAGCCCTCATCAGAGTAGACTTACCAGCACCGTTTGGAC 484882 Query 317096 CGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCT 317155 |||||||||| || | | | |||||| ||| | || ||||||| | |||| Sbjct 484881 CGCAAAGACCGTATCTTCTAGCTCTCTTCAATCTAAGTTGAGTCTTGTTCAATAAGATCT 484822 Query 317156 TACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | ||||||| ||||||||||||||||| | ||| || ||||| || Sbjct 484821 TGGCACCATAAGCCAGAGAGAACTCACAGTTACAGAGATCCTCACC 484776 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || ||||| || || || ||||| || |||||||| |||| Sbjct 445519 ACCACCTCTCAATCTCAGGACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGA 445578 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||| || || ||||| || || || || ||||| | ||||| ||| ||| Sbjct 445579 CAGAGTTCTGCCGTCTTCGAGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGG 445638 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| || || || || || | ||| || ||||||||||||| || | || || Sbjct 445639 GATACCCTCTTTATCCTGAATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCAAC 445698 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 445699 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445746 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | ||| | | |||| ||| | || ||| || || |||||||| || | Sbjct 445062 AACCACCTCTCAGTCTCAAAACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCGG 445121 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || | || || ||||| || || || ||||| || | | ||| |||||| | Sbjct 445122 ACAGAGTTCTACCGTCTTCTAGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGGG 445181 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||| || || || || | || ||| ||||||||||||| || | || | Sbjct 445182 GGATTCCTTCCTTATCCTGAATTTTGGACTTGACGTTATCGATAGTGTCAGAGGACTCAA 445241 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 445242 CCTCAAGGGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 445290 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||||||| || || || ||||| ||||| ||||| | | ||| | || || || Sbjct 445310 ACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGATAACGTTCTACCGTCTTCG 445369 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 ||||| || || || || || | | ||| |||||| || || || ||||| ||||| Sbjct 445370 AGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGGATTCCTTCCTTATCTTGA 445429 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || | || || ||||||||||||| || | || || || || ||||| ||||| Sbjct 445430 ATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTT 445489 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||||||| || ||||| Sbjct 445490 CCGGTCAAGGTTTTAACGAAAATTTGCAT 445518 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 ||||| || || || || ||||| |||||||| || | || || | || || ||| Sbjct 445766 ACCAGGTGCAAGGTCGACTCCTTTTGAATGTTGTAATCGGACAGAGTTCTACCGTCTTCT 445825 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || || ||||| || | | ||| |||||| || || || ||||| ||||| Sbjct 445826 AGCTGCTTACCAGCAAAAATGAGTCTTTGCTGGTCAGGAGGGATTCCTTCCTTATCTTGA 445885 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || | || || ||||||||||||| || | || || || || ||||| ||||| Sbjct 445886 ATTTTGGACTTGACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTT 445945 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||||||| || ||||| Sbjct 445946 CCGGTCAAGGTTTTAACGAAAATTTGCAT 445974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739106120578