Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 179 9e-40 seq1 179 9e-40 seq7 165 2e-35 >seq2 Length=1516309 Score = 179 bits (198), Expect = 9e-40 Identities = 180/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | |||||||| || || | || ||||| || |||||| | |||| Sbjct 177571 AGGTCAAAATGC---AGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGG 177515 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || ||||||||||| |||||||| ||||| || |||||||||||||||| Sbjct 177514 TCGAGTCTTCCGACACCATCGATAACGTCAAGTCCAAGATCCAAGACAAAGAAGGAATCC 177455 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| ||||||||| || | ||||||||||| || || ||||| || || || || ||| Sbjct 177454 CTCCTGACCAGCAAAGATTGATCTTCGCCGGTAAGCAACTCGAGGACGGCAGAACCCTTT 177395 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || ||| |||||||||| || || ||||| | ||| ||||||| ||| Sbjct 177394 CAGACTACAACATCCAAAAAGAGTCCACTTTGCATTTGGTTCTGAGACTGAGA 177342 >seq1 Length=1541475 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || |||||||| ||||| || ||| ||| Sbjct 445287 CAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCTGAC 445228 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || |||||||| || ||||||||||| || ||||||||| Sbjct 445227 ACTATCGATAACGTCAAGTCCAAAATTCAGGATAAGGAAGGAATCCCCCCTGACCAGCAA 445168 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || || ||||| ||||| || || ||||| ||||||| ||| | Sbjct 445167 AGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACAACATT 445108 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || ||| | ||||||||||| ||| Sbjct 445107 CAGAAGGAATCTACTCTTCATTTGGTTTTGAGACTGAGA 445069 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || |||||||| ||||| || ||| ||| Sbjct 445515 CAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCTGAC 445456 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || ||||| || || ||||||||||| || ||||||||| Sbjct 445455 ACTATCGATAATGTCAAGTCCAAAATTCAAGATAAGGAAGGAATCCCCCCTGACCAGCAA 445396 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| || || || |||||||| || || || | |||| |||||| | Sbjct 445395 AGACTTATTTTCGCTGGTAAGCAACTCGAAGACGGTAGAACGTTATCCGACTATAACATT 445336 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || ||||||| ||||||||| | ||| Sbjct 445335 CAAAAGGAGTCGACCTTGCATCTGGTTTTGAGATTGAGA 445297 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || |||||||| ||||| || ||| ||| Sbjct 445971 CAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCTGAC 445912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || ||||| || || |||||||||||||| ||||||||| Sbjct 445911 ACTATCGATAATGTCAAGTCCAAAATTCAAGATAAGGAAGGAATCCCTCCTGACCAGCAA 445852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || || ||||| ||||| || || ||||| ||||||| ||| | Sbjct 445851 AGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGATTACAACATT 445792 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || |||| || ||||||||| | ||| Sbjct 445791 CAAAAGGAGTCGACCTTGCACCTGGTTTTGAGATTGAGA 445753 Score = 152 bits (168), Expect = 1e-31 Identities = 171/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || ||| | || || ||||| ||||| | ||||| ||| Sbjct 446205 AAAATGC---AGATTTTCGTTAAGACTTTGACCGGCAAAACTATCACTTTAGAGGTAGAA 446149 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| ||||| || |||||| |||||||| || || |||||||||||||| Sbjct 446148 TCTTCTGACACTATCGATAATGTCAAATCGAAGATTCAAGATAAGGAAGGAATCCCTCCT 446089 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||| |||| || || || || || ||||| ||||| || || ||||| ||||| Sbjct 446088 GACCAGCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACTCTGTCCGAT 446029 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| | || ||||| || || |||| | || ||||| | ||| Sbjct 446028 TACAACATTCAGAAAGAGTCTACCTTGCACTTGGTCCTGAGATTGAGA 445981 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || |||||||| ||||| || ||| ||| Sbjct 445743 CAAATTTTCGTTAAAACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCCTCTGAC 445684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || |||||||| ||||| || ||||| || || || || Sbjct 445683 ACTATCGATAATGTGAAATCTAAAATTCAGGATAAAGAGGGTATCCCGCCTGATCAACAG 445624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || |||||||| || || ||||| | ||||| ||| | Sbjct 445623 AGATTGATTTTCGCTGGTAAGCAACTCGAAGACGGCAGAACTCTGTCTGATTACAACATT 445564 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || |||| || || ||||| | ||| Sbjct 445563 CAGAAAGAGTCTACCTTGCACCTGGTCCTGAGATTGAGA 445525 >seq7 Length=988507 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||||||||||||||| || ||| Sbjct 50300 CAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 50241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || ||||||||| Sbjct 50240 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAGCAA 50181 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || || |||||||| || || || |||||| | || || ||| || Sbjct 50180 AGACTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAACATC 50121 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || |||| || || | ||||| ||| Sbjct 50120 CAGAAGGAGTCCACTTTGCACCTGGTCCTCAGACTGAGA 50082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358