Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20polymorpha_20[genbank_20GCA_5F001664045.1_202016-06-17] 7 sequences; 8,974,371 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq2 89.7 5e-13 seq1 87.8 2e-12 >seq7 Length=988507 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| ||| ||||||||| ||||| ||||| || || || | |||| ||| Sbjct 50095 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCG 50154 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| ||||| | || ||||| | || | | |||||||||| | Sbjct 50155 AGCTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGG 50214 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | | |||||| ||||||||||| | || || || || Sbjct 50215 ATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTT 50273 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| ||||| ||||| || ||||| Sbjct 50274 ACCGGTCAGGGTCTTGACGAAGATTTGCAT 50303 >seq2 Length=1516309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| || || ||||| ||||| || ||||| | |||| ||| Sbjct 177355 ACCAAATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCTGAAAGGGTTCTGCCGTCCTCG 177414 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| |||| | || ||||| | || | | || ||||| | Sbjct 177415 AGTTGCTTACCGGCGAAGATCAATCTTTGCTGGTCAGGAGGGATTCCTTCTTTGTCTTGG 177474 Query 41774 ATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 || || ||| | | | ||| | |||||| ||||| ||||||| || || | Sbjct 177475 ATCTTGGACTTGACGTTATCGATG-----GTGTCGGAAGACTCGACCTCCAAGGTGATGG 177529 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || |||| ||||| |||||||||||||| || Sbjct 177530 TCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTTT 177566 >seq1 Length=1541475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||||||||| || |||||| ||||||||||||||||| | || | |||| Sbjct 445307 AAAACCAGATGCAAGGTCGACTCCTTTTGAATGTTATAGTCGGATAACGTTCTACCGTCT 445366 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||| ||||| || ||||| || || | || ||||| | ||| | | ||||| | | Sbjct 445367 TCGAGTTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCAGGGGGGATTCCTTCCTTAT-C 445425 Query 41771 ATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 ||| |||| | ||| || || | |||||| ||||| ||||| | || || Sbjct 445426 TTGAATTTTGGACTTGACATTATCG--ATAGTGTCAGAGGACTCAACCTCAAGGGTGATG 445483 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| || || |||||||| ||||| Sbjct 445484 GTCTTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445518 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| || ||| ||||||||||| || || || || || | |||| ||| Sbjct 445538 ACCAGGTGCAAGGTAGACTCTTTCTGAATGTTGTAATCAGACAGAGTTCTGCCGTCTTCG 445597 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA-ACGCTCTCCTTGTCCA 41771 || ||||| || ||||| |||| | |||||| || |||||| || |||| || ||| Sbjct 445598 AGTTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGCGGGATACCCTCT--TTATCC- 445654 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| |||| | || || | | |||||| ||||| ||||| | || || || Sbjct 445655 TGAATTTTAGATTTCACATTATCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTC 445714 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| || || |||||||| ||||| Sbjct 445715 TTTCCGGTCAAGGTTTTAACGAAAATTTGCAT 445746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303959548400