Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2119 297 2e-75 >seq2119 Length=607893 Score = 297 bits (328), Expect = 2e-75 Identities = 600/876 (68%), Gaps = 27/876 (3%) Strand=Plus/Minus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||||||||| || || |||||||| || | | ||||| || |||||||| || || Sbjct 161087 ACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTCTCCATAAAGTCGAAT 161028 Query 16019 GGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAACAATAATCTATCCGCC 16075 |||||| | ||| | |||| || || ||||| ||| | | || || |||||| || Sbjct 161027 GGATTTGT--AACG-TCGTATACCTTTTCACATCCTAATGCAATCAGTAGTCTATCTGCA 160971 Query 16076 ACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATT 16135 ||||| || | |||||| ||| ||||| ||||| || | || || ||||| | Sbjct 160970 ACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAGTTGACAGGTAGG 160911 Query 16136 GCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACA 16195 || || || || | || ||||| |||| ||| ||||| | || || | ||| || | Sbjct 160910 GCGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAATGATTTGTCTGACAATT 160851 Query 16196 CTATTTAACGGAGGGTTTAAT--AAGTGTTTAAACATTATACAAGCAAAATCACAATGCA 16253 | || | | |||| | | || ||| ||| | | |||||||||||| ||| | Sbjct 160850 TT-TTCGTCTG-GGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCAAAATCGGTATGTA 160793 Query 16254 ATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTT 16313 | ||||| || |||| || | |||||| || || || | ||||||||| | |||| | Sbjct 160792 AACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGCATCAAACCTCTCT 160733 Query 16314 TTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAA 16373 |||| | ||| || || | |||||||||||||| ||||| ||||||||||| || |||| Sbjct 160732 TTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCTTCAACAGCAGCAA 160673 Query 16374 ATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaat 16433 |||| ||||| | ||| | || || |||| | | ||||||||| ||||| | Sbjct 160672 ATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCCATTTTAAGGCCCATT 160613 Query 16434 ttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtt--tttttC 16491 || |||| || | ||| || | || |||||||| ||| || |||| ||| | Sbjct 160612 CGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAAT-AAGAATTCACTTTCC 160554 Query 16492 TTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551 |||| |||| || |||||||| || | |||| ||| |||| |||||||| || || Sbjct 160553 TTTG-GATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGAATGAATGTTTTC 160495 Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAA 16611 ||| || || || ||||| || ||| |||| || | ||||| || ||| | || Sbjct 160494 CATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAACATCACTTGAGAA 160435 Query 16612 CCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA---- 16667 | || |||| ||||| || ||||| ||||| ||| ||||| ||||| || | Sbjct 160434 ATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAGAACGCTAGAACTCT 160375 Query 16668 TGTGTTTAATAAAAttt--ttttCGTT--ATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 || | || || ||| |||||||| |||| | ||| ||| ||| |||||| Sbjct 160374 TGAAATGAAGAATCTTTCATTTTCGTTCAATCT-ATTGTT----CCAATCATGCAAATCT 160320 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 || || | ||| | || || ||||||| ||||| || | ||||| || ||||||| | Sbjct 160319 TTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTGTACATTTGC 160260 Query 16784 CATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819 || || || | || || ||||| | |||| || Sbjct 160259 CAAATTTCGTGATACTTGATTGGAAAGAGAACAAAC 160224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497650565200