Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2119 217 3e-51 seq2206 140 7e-28 seq2121 104 5e-17 >seq2119 Length=607893 Score = 217 bits (240), Expect = 3e-51 Identities = 431/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Plus Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729 ||||| |||||| | ||| || ||| || ||||| | |||||||| || || Sbjct 160195 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 160251 Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||| |||| | || ||||| ||||||| || ||| | ||| Sbjct 160252 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 160311 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 || || | || || |||||||| ||| | ||| | || |||||| || || Sbjct 160312 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 160371 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || |||| ||||| ||||| | | ||||||||| || || |||||| |||| ||| Sbjct 160372 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 160431 Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 || |||| |||| | || || ||||| || || | |||||| || || ||||| || Sbjct 160432 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 160489 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | || | |||| || |||||||| || | ||| Sbjct 160490 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 160549 Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 ||| | |||| || || ||| | | || ||| || ||| | | |||| Sbjct 160550 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAAAG 160608 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140 | |||||||| | |||||||| |||| | || || | ||| ||||| || Sbjct 160609 GCCGAATGGGCCTTAAAATGGATTGCAGATAAAGATGCGTTGTTTGCAGAGAGGTTGGTG 160668 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 160669 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 160728 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 || || ||||| | |||||||| || || ||||| ||||| |||| | || || ||| Sbjct 160729 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 160788 Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| ||| || |||||||| Sbjct 160789 GGTTTACATACCGATTTTGCTTGTTT 160814 >seq2206 Length=14499 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 9180 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 9121 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 9120 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 9061 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 9060 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 9001 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 9000 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 8951 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 12142 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 12083 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 12082 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 12023 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 12022 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 11963 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 11962 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 11913 >seq2121 Length=385940 Score = 104 bits (114), Expect = 5e-17 Identities = 127/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 165104 GATGAATGGAATACTTGGAATAAAAT-ACACGATCCTGTTTTACATATAGAGCTAAGAAG 165162 |||||||||| | |||||||| | ||| |||||||| || |||||||||||||||| Sbjct 355961 GATGAATGGAGTTCTTGGAATCTCAGGACA-GATCCTGTGTTGCATATAGAGCTAAGAAA 356019 Query 165163 ATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGC-TA 165221 |||||||||||| | | || || || |||| ||||| | ||| || || || | Sbjct 356020 ATGGGCAGATATTTTAATTATTGCCCCTCTAACGGCAAATACTTTGAGTAAAATTGCATT 356079 Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 | ||| | ||| |||| |||||||| | | |||||||||||||||| Sbjct 356080 AGGGT-TGTGTGATAATTTGTTAACTAATGTTGTTAGAGCGTGGAATA 356126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151361784811256