Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2131 120 5e-23 seq2120 107 3e-19 seq463 107 3e-19 >seq2131 Length=217070 Score = 120 bits (132), Expect = 5e-23 Identities = 179/253 (71%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| || |||||||||||||||| || ||||||||||| || | | | ||| | Sbjct 162905 AGATC-CTCAGAGATAACATCCAAGGTATTACCAAGCCAGCAATTAGAAGATTAGCTAGA 162847 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| |||||| | |||| | ||| | || ||||| || | | ||| | ||| Sbjct 162846 AGAGGTGGTGTCAAGAGAATCTCGGCTTTGATTTACGAAGAAGTTAGGGCAGTTCTTAAG 162787 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| | | ||| || ||||| || ||||| || ||||| || | ||| Sbjct 162786 ACTTTCCTTGAAAACGTCATTAGAGATGCAGTCACTTATACTGAACACGCAAAGAGAAAG 162727 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || ||||||||| | ||| |||||||||| ||||| | ||||| | | |||||||| Sbjct 162726 ACCGTCACCTCCTTAGATGTCGTCTATGCTTTGAAGAGACAAGGTAGAACCCTTTATGGT 162667 Query 16688 TTTGGAAGTTAAT 16700 ||||| ||| || Sbjct 162666 TTTGGTGGTTGAT 162654 >seq2120 Length=553244 Score = 107 bits (118), Expect = 3e-19 Identities = 175/251 (70%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| ||| |||||||||||||||| || ||||||||||| ||| | | | ||| | Sbjct 489839 AGATC-CTTAGAGATAACATCCAAGGTATTACCAAGCCAGCAATCAGAAGATTAGCTAGA 489781 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || ||| | | || | ||| | || ||||| | | | ||| | ||| Sbjct 489780 AGAGGTGGTGTTAAGAGAATTTCAGCTTTGATTTACGAAGAAGTCAGAGCCGTTCTTAAG 489721 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | |||||| | | |||||| || || || |||||||| ||||| || | ||| Sbjct 489720 ACCTTCCTTGAAAACGTTATTAGAGACGCAGTCACTTATACCGAACACGCAAAGAGAAAG 489661 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || || | ||| | |||||||||||||| | ||||| | | |||| ||| Sbjct 489660 ACCGTTACTTCTCTAGATGTTGTCTATGCATTGAAGAGACAAGGTAGAACCCTTTACGGT 489601 Query 16688 TTTGGAAGTTA 16698 ||||| |||| Sbjct 489600 TTTGGTGGTTA 489590 >seq463 Length=1056 Score = 107 bits (118), Expect = 3e-19 Identities = 175/251 (70%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| ||| |||||||||||||||| || ||||||||||| ||| | | | ||| | Sbjct 465 AGATC-CTTAGAGATAACATCCAAGGTATTACCAAGCCAGCAATCAGAAGATTAGCTAGA 407 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || ||| | | || | ||| | || ||||| | | | ||| | ||| Sbjct 406 AGAGGTGGTGTGAAGAGAATTTCAGCTTTGATTTACGAAGAAGTCAGAGCCGTTCTTAAG 347 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | |||||| | | |||||| || || || |||||||| ||||| || | ||| Sbjct 346 ACCTTCCTTGAAAACGTTATTAGAGACGCAGTCACTTATACCGAACACGCAAAGAGAAAG 287 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || || | ||| | |||||||||||||| | ||||| | | |||| ||| Sbjct 286 ACCGTTACTTCTCTAGATGTTGTCTATGCATTGAAGAGACAAGGTAGAACCCTTTACGGT 227 Query 16688 TTTGGAAGTTA 16698 ||||| |||| Sbjct 226 TTTGGTGGTTA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072930690026