Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2119 325 4e-84 seq259 89.7 6e-13 seq2140 87.8 2e-12 >seq2119 Length=607893 Score = 325 bits (360), Expect = 4e-84 Identities = 548/778 (70%), Gaps = 35/778 (4%) Strand=Plus/Minus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || |||||| || ||||| || | |||||| |||||||||| |||||| || || Sbjct 160986 CAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAG 160927 Query 92977 -AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 ||| | |||||||| ||||| || ||| | | || || || |||||||||| | | Sbjct 160926 CAAGTTG-ACAGGTAGGGCGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAA 160868 Query 93036 AGATTTCTATTACTCTACTATTTGGT---GGTTTTTGTACGACATAATTGT----ACATT 93088 ||||| | | || | | ||| || || | | || | || ||| | | Sbjct 160867 TGATTTGTCTGACAAT--TTTTTCGTCTGGGGTATGGTTC-----AAATGTGAAAAGAGC 160815 Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || || ||||| ||||||||||||||||| |||| | |||| ||| ||| ||| || Sbjct 160814 AAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTC 160755 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 |||||||| | || |||| || || | ||| || || || ||||| |||||| || Sbjct 160754 AAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAG 160695 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CT 93267 || |||||||| || || ||||||||||| | | || ||||| || ||| || Sbjct 160694 AAAATACCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCT 160635 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||||||||| ||||| ||||| |||| ||| ||||| || | |||||| || || Sbjct 160634 GCA-ATCCATTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGC 160576 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || |||| | | || | || | | |||| ||||| ||||| || || | |||||| Sbjct 160575 ATTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATA 160516 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| ||||| | || ||||| ||||||||| || ||||||||| |||| || | Sbjct 160515 AGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGG 160456 Query 93448 GATCTGCACTTC--TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || || || || |||||||| |||| || | ||||||||||||||||||||| || Sbjct 160455 AATTTGAACATCACTTGAGAAATTCTCA--ACTAAATTTTCATTGACTATACCATCAGAA 160398 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATG-----TTTCTCATCATC-TTTAAGC 93559 || ||||| || || || | || | | ||||| | | |||| || || || | Sbjct 160397 GCAGCAAAGAACGC---TAGA-ACTCT-TGAAATGAAGAATCTTTCATTTTCGTTCAATC 160343 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || | |||||| | |||||| || ||||| | ||| || ||||||| || |||| Sbjct 160342 TATTGTTCCAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATG 160283 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 ||||||| || |||||||| | ||| || || ||||| | |||||||| | ||||| Sbjct 160282 CTTCTGCCTTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAAGAGAACAAA 160225 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 281243 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 281184 Query 126328 TTCGAACCCCACACCTGACA 126347 ||||||||||||| ||| || Sbjct 281183 TTCGAACCCCACAGCTGTCA 281164 >seq259 Length=1324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 108 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 49 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTG--GAATTTTTGTT 126369 ||||||||||||| ||| ||||| | || ||| ||||| || || Sbjct 48 TTCGAACCCCACAGCTGTCAAATATTTTTTTGCTGAATTATTTTT 4 >seq2140 Length=157369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 4881 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 4822 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTG--GAATTTTT 126366 ||||||||||||| ||| ||||| | || ||| ||||| || Sbjct 4821 TTCGAACCCCACAGCTGTCAAATATTTTTTTGCTGAATTATT 4780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843523393680