Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2206 152 1e-31 seq2119 152 1e-31 seq2142 141 2e-28 >seq2206 Length=14499 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || ||||| || | ||||| || ||| || || || || |||| Sbjct 9181 ACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAG 9123 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| |||| || ||||| ||||| |||||||| | ||| ||||| ||||||| Sbjct 9122 ACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTG 9063 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| |||||| || ||||| |||| || || || || | Sbjct 9062 GAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGA 9003 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 |||||| ||||| || ||||||||||| ||||||| ||| || ||||| ||| Sbjct 9002 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 8950 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || ||||| || | ||||| || ||| || || || || |||| Sbjct 12143 ACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAG 12085 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| |||| || ||||| ||||| |||||||| | ||| ||||| ||||||| Sbjct 12084 ACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTG 12025 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| |||||| || ||||| |||| || || || || | Sbjct 12024 GAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGA 11965 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 |||||| ||||| || ||||||||||| ||||||| ||| || ||||| ||| Sbjct 11964 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 11912 >seq2119 Length=607893 Score = 152 bits (168), Expect = 1e-31 Identities = 509/790 (64%), Gaps = 20/790 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTG--GTATTATAATATTTTTCTCCTATCAATACATATAAT 49649 |||||| || ||||||||| | || |||| ||||| | | ||| || | | Sbjct 161040 CATAAAGTCGAATGGATTTGTAACGTCGTATACC--TTTTCACATCCTAATGCAATCAGT 160983 Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 | |||||| || ||||| || ||||| || |||| || || ||||||||| | || Sbjct 160982 AGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAG 160923 Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat 49768 || | |||| || ||| | || | ||||||| | || || || |||| |||| || Sbjct 160922 TTGACAGGTAGGGCGTCAGTGAAGTATTTCTTTT-CAATATCAACGGCTTCGGTAATGAT 160864 Query 49769 cataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | | | | |||| | ||| || | ||| | | | | ||||| || Sbjct 160863 TTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGT---GAAAAGAGCAAACAAGC 160807 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 |||||| ||||||||||| || || ||| | || | || || || || || ||||| Sbjct 160806 AAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGG 160747 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| || ||||||||||| | ||| || || |||||||| || ||| ||||| ||||| Sbjct 160746 CATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACC 160687 Query 49949 CTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCA 50008 || ||| |||||||| | | || || |||||| | | |||| ||||| Sbjct 160686 TTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCCA 160627 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT-- 50066 |||| ||||| || || |||| |||||| | || || |||| || || || ||| Sbjct 160626 TTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATAA 160567 Query 50067 -AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125 |||||| |||| | || ||||||||||| |||| Sbjct 160566 GAATTCA---CTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTC 160510 Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 ||||| | |||||| ||||| || ||| || | | || |||| | || Sbjct 160509 CGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTG 160450 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 ||| || |||| ||||||||||| ||| || ||||||||||| || || || Sbjct 160449 AACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAA 160390 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATT-TTCCCAAG 50301 ||| |||| ||| | ||| || | ||||||| || || || ||| |||| | Sbjct 160389 GAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTCCAATC 160330 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 || ||| ||| || || | ||| | ||| || ||||| || |||||| | | || | Sbjct 160329 ATGCAA-ATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCT 160271 Query 50362 TATACATTTG 50371 | |||||||| Sbjct 160270 TGTACATTTG 160261 >seq2142 Length=155211 Score = 141 bits (156), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || || || | |||| || || ||| | Sbjct 147778 GTTCAATGATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGT 147719 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || ||||| |||| |||| || ||||| ||||| |||||||| | ||| |||| Sbjct 147718 TGTAGTCGGATAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTT 147659 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| |||||||| || || | || ||||| || | || | Sbjct 147658 GGTCAGGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAG 147599 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||||| ||||||| |||||||| ||||| ||||| || || | ||| || ||||| | Sbjct 147598 AAGATTCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCT 147539 Query 192539 T 192539 | Sbjct 147538 T 147538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984448692920700