Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2119 179 7e-40 seq2206 149 1e-30 seq2142 132 9e-26 >seq2119 Length=607893 Score = 179 bits (198), Expect = 7e-40 Identities = 368/542 (68%), Gaps = 9/542 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| || || ||| | |||||||||||||||||||| || | | || || Sbjct 161102 TTTTGGTAGTCGGAGACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTC 161043 Query 38892 TTCATAAAATCAAATGGATTTTTG--GTATTATAATATTTTTCTCCTATCAATACATATA 38949 | |||||| || ||||||||| | || |||| ||||| | | ||| || | Sbjct 161042 TCCATAAAGTCGAATGGATTTGTAACGTCGTATACC--TTTTCACATCCTAATGCAATCA 160985 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 || |||||| || ||||| || ||||| || |||| || || ||||||||| | | Sbjct 160984 GTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCA 160925 Query 39010 ATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | || | |||| || ||| | || | ||||||| | || || || |||| |||| Sbjct 160924 AGTTGACAGGTAGGGCGTCAGTGAAGTATTTCTTTT-CAATATCAACGGCTTCGGTAATG 160866 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 || | | | | |||| | ||| || | ||| | | | || ||||| Sbjct 160865 ATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGT---GAAAAGAGCAAACAA 160809 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| |||||||||||||| || ||| | || | || || || || || ||| Sbjct 160808 GCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCT 160749 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| || ||||||||||| | ||| || || |||||||| || ||| ||||| ||| Sbjct 160748 GGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATA 160689 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||| |||||||| | | || || |||||| | | |||| |||| Sbjct 160688 CCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATC 160629 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || |||| |||||| || || |||| |||||| | || || |||| || || || ||| Sbjct 160628 CATTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAAT 160569 Query 39369 AA 39370 || Sbjct 160568 AA 160567 >seq2206 Length=14499 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || ||||| || | ||||| || || ||| || Sbjct 9189 TTCTTACCACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 9130 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || || ||||| ||||| ||||| || | ||| |||||| Sbjct 9129 TAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGG 9070 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| |||||| || ||||| ||||| || || Sbjct 9069 TCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGAT 9010 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || ||||||| ||||| || ||||||||||| ||||||| || || ||||| ||| Sbjct 9009 GACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 8950 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || ||||| || | ||||| || || ||| || Sbjct 12151 TTCTTACCACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 12092 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || || ||||| ||||| ||||| || | ||| |||||| Sbjct 12091 TAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGG 12032 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| |||||| || ||||| ||||| || || Sbjct 12031 TCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGAT 11972 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || ||||||| ||||| || ||||||||||| ||||||| || || ||||| ||| Sbjct 11971 GACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 11912 >seq2142 Length=155211 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || || || | |||| || || || || || Sbjct 147773 ATGATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAG 147714 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || || ||||| ||||| ||||| || | ||| ||||||||| Sbjct 147713 TCGGATAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCA 147654 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| |||||||| || || | || ||||| || || || || ||| Sbjct 147653 GGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAGAAGAT 147594 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||| |||||||| ||||| ||||| || || | || || ||||| || Sbjct 147593 TCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCTT 147538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905107918155600