Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2142 141 2e-28 seq2206 114 3e-20 >seq2142 Length=155211 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || || || || ||||| ||| ||||||||| | Sbjct 147549 TTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCTTCTGACACCAT 147608 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||||||||||| ||||| || ||||| ||| || ||| |||||||| Sbjct 147609 CGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGACCAACAAAGACT 147668 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| || || ||||| || |||||||| || ||||| |||| |||||| |||| || Sbjct 147669 TATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAACATCCAAAA 147728 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| |||||| | || |||||| Sbjct 147729 GGAATCTACCCTTCACTTGGTCTTGAGA 147756 >seq2206 Length=14499 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || || ||||| || |||||||| |||| Sbjct 8969 AAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCTGACACTATCGACAAT 9028 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || ||| |||||||||||||| Sbjct 9029 GTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGACTTATCTTT 9088 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| || |||||| | || |||||| | || || || ||| Sbjct 9089 GCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAGGAATCT 9148 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 9149 ACTCTTCACTTAGTCTTGAGA 9169 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || || ||||| || |||||||| |||| Sbjct 11931 AAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCTGACACTATCGACAAT 11990 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || ||| |||||||||||||| Sbjct 11991 GTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGACTTATCTTT 12050 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| || |||||| | || |||||| | || || || ||| Sbjct 12051 GCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAGGAATCT 12110 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 12111 ACTCTTCACTTAGTCTTGAGA 12131 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||||||| || || || | || ||||||| |||||| || || Sbjct 9169 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 9110 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| | ||||| || || |||||||| | |||||| Sbjct 9109 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTG 9071 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||||||| || || || | || ||||||| |||||| || || Sbjct 12131 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 12072 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| | ||||| || || |||||||| | |||||| Sbjct 12071 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTG 12033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181783217359922