Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2119 242 5e-59 seq2159 89.7 6e-13 >seq2119 Length=607893 Score = 242 bits (268), Expect = 5e-59 Identities = 912/1410 (65%), Gaps = 39/1410 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| || ||||| || | |||||| ||| || || | ||||| || Sbjct 506044 GTTGACAATCTGGAATTCACCGGCTAAAACTCTTCTAGAGTAAATATTGGAAGTGTAAGG 505985 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 |||||||||||| || | ||| | ||||| | || || || || ||||||||||| | Sbjct 505984 TTCAAAGCATTCGTTGTAACCTAGAATTTGAGATGTTGAAGCAGTCGGCATTGGTGCAAC 505925 Query 110788 CA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | || || | | | || || || ||||||| ||||| | ||||||||| Sbjct 505924 AAGCAATGAATTTCTCAAA--CCATTGGCCTTGATTTTCTCCTTTAATGAATCCCAGTCA 505867 Query 110846 TAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || |||||| | ||| |||| | |||||||| || | |||||||| || Sbjct 505866 TA--TAAG-TTGGTTGGCTTCTTACCCCAAAGATCAAACTGTAGGAGACCTTGGGATGCA 505810 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 ||||| || ||||| || ||||| | || | || |||||| || |||||| Sbjct 505809 GGAGATCCTTCAAAAGTCTCATATGGTCCATCCCTAATAGATAATTCAACACTTGCCTCC 505750 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | | || ||||| ||||||||||| || || ||||| ||||| ||||| ||| Sbjct 505749 AAAGCAGCATGATAAATGGTTTCAAAAATTTGAATATTCAGTTCCTTTGCTTCTGGCGAA 505690 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||||| | | ||| || || |||| || | |||||| ||||| | | |||| Sbjct 505689 TCAAATGGTAATCTCAACATCATGAAGGCATCTGCCAAACCTTGGACACCAACAGCAATT 505630 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 ||||||| || |||||| || | | ||||| ||||| ||||| | ||||| || ||| Sbjct 505629 GGTCTGTTTCTCATATTTGATCTCCTTGCAGTTTCAACAGGATAGTAGTTTCTATCGATG 505570 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA-----AT 111197 | | || | ||||| || |||| |||||| |||||||| | || ||| | | Sbjct 505569 ATTTTATTCAAGTTTTTAGTCACAACCTTTGTAATTTCATGTAACTTCTCAAAGTTATAC 505510 Query 111198 CAAAAGTGCGAGTC-TC---TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 ||| ||| | ||| || |||| ||| | || | || | || ||||| Sbjct 505509 CAACAGTTCTTGTCATCACTTTCA---ACAAATGCAGGCAATGCAACACTAGCTAAATTA 505453 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 ||||| || || || || || || || | |||||| ||||| |||||| Sbjct 505452 CAAACTGCTGTTTCCTCAGGTGATGAATATTCAACAATTTCACAGCATAAATTGGAAGAT 505393 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || |||||||| | ||| ||| |||||||| || |||||||| || | |||| Sbjct 505392 TTGATAACACCCAAATTTTGTTGATTAGATTTCTTGTTACATGCATCCTTATATAACATG 505333 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGG 111432 | || || || || || || || | || | || | | ||| ||| | | || Sbjct 505332 AAAGGTGTACCAGTTTCAGTTTGAGCTTCTAAGATCGAATACCATAACTTTTG----TGC 505277 Query 111433 TACAATGG--CGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | ||| | | ||| | ||| | | || || || || || | ||| || || Sbjct 505276 TTTAATTGTTCTCCTGCCTCTACCTTCTCTTTCATATTTGGTATATAATTCTTTGAATTC 505217 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTGAC 111548 ||||| | || | ||| |||| ||| || || |||| | || ||| | Sbjct 505216 ATCACCATATACATCACTCAAACCAGGTG-CTTCACTAGGGGAGAAGAAAGTCCAATCTT 505158 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 || || |||||| | | ||| || | || |||||||| | | | || | ||||| Sbjct 505157 CATTTTTCTCAACTCTTTCCATAAATAAATCAGGAATCCATAAAGCAGGGAATAAATCTC 505098 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | | | ||||| | ||| ||||| | | |||| || || | ||||| | Sbjct 505097 TTGCTCTAATTTCTTCTTTACCGTGGTTTTTCCTGATATCAATAAAATCAAGAATATCTG 505038 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 111724 ||||| ||||||| ||| | ||| | | || |||| | ||| |||| | Sbjct 505037 AATGCCAAGGCTCAATATATAGTGCAAACGCACCAGGTCTTT-TATTACCACCTTGGTCA 504979 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 ||||| | || ||| ||||| || | || |||||||||||| |||| ||| |||| Sbjct 504978 ACATACCTTGCAGTGTTATTAAAGACCCTAATCATTGGAATAATCCCATTGGATGTACCA 504919 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || |||| ||| | | | ||| | || ||| || || | ||||||||| Sbjct 504918 TTAGTACCGGCAATATAAGAACCAGTTGATCTAATATTATGTATATGTAACCCAATACCA 504859 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| || || || ||||| || | | ||| |||||||||| | || || Sbjct 504858 CCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTATCATAGATACCTTCAATGGAA 504799 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| | || | | ||| || ||||| || |||||| ||||| | |||| Sbjct 504798 TCGTCCTTCATTGCAACTAAGAAACATGAAGACATTTGATTTCTTGGAGTACCCGAATTG 504739 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 || || ||||| | || || |||| |||||| | |||||| | || || || | Sbjct 504738 AAAAGAGTTGGAGAAGCATGTGTGAA-ATACCTCTTTGACATCAAATTATAAGTTTCAAT 504680 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCC 112053 ||||||||||| || || || || || || Sbjct 504679 AACAGAATCAATATCATCACCATGAATACC 504650 >seq2159 Length=100225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/414 (65%), Gaps = 5/414 (1%) Strand=Plus/Plus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 || || |||||||| | |||||| | || | || || | | || || |||||| Sbjct 49218 ATTTTACGATCAAATCTACCCGGTCTTAGCAAAGCTGGGTCCAAAACGTCAACACGATTA 49277 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 || | |||| ||| |||| | ||| | ||| |||||||| ||| || | Sbjct 49278 GTACCTGCAAAAACAACAACATGATCGTCAGACTTAAATCCATCCATTTCGACTAGAAGC 49337 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT-TGC-- 11620 ||||| | || | |||||| |||||||| || |||||| | | | | | || Sbjct 49338 TGATTTAAGGTGTTTTCTCTTTCATCATTACCTCCCATACCTCTTCCCTTTCCTCTGGAT 49397 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | ||||| || ||||||| ||| |||||| ||||| |||||| | || | Sbjct 49398 TTTCCGATAGCATCGATTTCATCAACGAAAACAATAGATGGTGCATTTTCTCTTGCAGTC 49457 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | || ||||| | | ||||| |||||||||||||| |||||||| | | Sbjct 49458 TTGAACAACTCACGAACACGTGACGCACCAACACCAACAAACATTTCCACAAATTCAGAA 49517 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 |||| || | | ||| || || || |||||| || ||||| || || | || Sbjct 49518 CCAGA-AACAGAGTAGAACGGAACCCCTGCTTCACCAGCAGTGGCTTTAGCAAGTAACGT 49576 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||| | || || ||||| |||||||| || || Sbjct 49577 TTTACCTGTACCGGGTGGACCATTTAAAATAGCACCTCGAGGGATCTTTGCGCC 49630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012515307200