Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000764455.1_202014-10-07] 2,482 sequences; 12,940,563 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2206 136 5e-27 seq2142 127 2e-24 seq2119 96.9 4e-15 >seq2206 Length=14499 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || ||||||||||| | || || |||||| | Sbjct 8954 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCT 9013 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| ||||||| || |||||||| || ||||| || ||||| Sbjct 9014 GACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 9073 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| ||||||||| | || |||| | | || | | ||||| || Sbjct 9074 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAAC 9133 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| |||||||| |||||||| Sbjct 9134 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTG 9166 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || ||||||||||| | || || |||||| | Sbjct 11916 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCT 11975 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| ||||||| || |||||||| || ||||| || ||||| Sbjct 11976 GACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 12035 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| ||||||||| | || |||| | | || | | ||||| || Sbjct 12036 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAAC 12095 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| |||||||| |||||||| Sbjct 12096 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTG 12128 >seq2142 Length=155211 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | ||||| ||||| ||||| | || ||||| || | Sbjct 147541 ATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 147600 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| || || || || ||||| || ||||| || ||||| Sbjct 147601 GACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGACCAA 147660 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| ||||||||| | || |||| | | || || | ||||| || Sbjct 147661 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAAC 147720 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| || ||||| | |||||| Sbjct 147721 ATCCAAAAGGAATCTACCCTTCACTTGGTCTTG 147753 >seq2119 Length=607893 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/426 (67%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||| ||||| |||||||| ||||| ||||| || || |||||| | Sbjct 160669 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 160728 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||| | || ||||||||||| || |||| || ||||||||||| | | | || || Sbjct 160729 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 160788 Query 64846 GGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCAC 64903 || | || || ||||| | || | || |||| || | || || ||| || Sbjct 160789 GGTTTACATACCGATTTTGCTTGTTTGCTCTTTTCA--CATTTGAA--CCATACC-CCAG 160843 Query 64904 ATGGGACTATAAT-TGATATAGTAAAATCG--GCTGTAGAAATTGAAAAGGAATTCATTA 64960 | | | || | || | | | | || || || || ||||||||| ||| | | | Sbjct 160844 ACGAAAAAATTGTCAGACAAATCATTACCGAAGCCGTTGATATTGAAAAGAAATACTTCA 160903 Query 64961 CTGCCGCGCTTCCGTGTCGTC-TCATCGGCATGGATGCCGATAAGATGAAACAGTATATC 65019 ||| ||| || || |||| | | |||| ||| || ||| |||| |||||| || Sbjct 160904 CTGACGCCCTACC-TGTCAACTTGCTCGGTATGAATAAGGATTTGATGTGTCAGTATGTC 160962 Query 65020 GAATTTGTAGCAGATCGCCTGCTTACT-CAGTTTGGTATTAAGCCCTACTGGAATTCTTC 65078 || ||||| |||||| | || || | | || | | | | || || || | | | Sbjct 160963 GAGTTTGTTGCAGATAGACTACTGATTGCATTAGGATGTGAAAAGGTATACGACGT-TAC 161021 Query 65079 AAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAA 65138 ||||||||| |||| ||||||| || ||| | || || || |||||||| ||||| Sbjct 161022 AAATCCATTCGACTTTATGGAGAACATTTCCCTTGCTGGTAAAACAAACTTTTTCGAAAA 161081 Query 65139 GAGGGT 65144 ||| || Sbjct 161082 GAGAGT 161087 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 80044 AGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGC 80103 || || ||||| || |||||||| ||||||||||| || || | ||||| || | | Sbjct 506346 AGGTAATACATACCTGTCTTGAGCCCCTTCTTCCAACCATAGAAATGCATGGACGTTAAT 506287 Query 80104 TTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCC 80163 || | | ||| || || | || |||||||| ||| || |||||| | | | || Sbjct 506286 TTACCCATTGTTGGATTTTTCAAATGGATGTTCATAGATTGTGACTGATCCACGTATGCA 506227 Query 80164 CCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | ||| || ||||| || ||||||| |||||| | || ||||| || || Sbjct 506226 CCTCTATCAGCAGCCATATCGATAATTGTCTTTTGCGAGATCTCCCAGACAGT 506174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292706119840