Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq122 293 2e-74 >seq122 Length=40810 Score = 293 bits (324), Expect = 2e-74 Identities = 599/876 (68%), Gaps = 27/876 (3%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||||||||| || || |||||||| || | | ||||| || |||||||| || || Sbjct 14492 ACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTCTCCATAAAGTCGAAT 14551 Query 16019 GGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAACAATAATCTATCCGCC 16075 |||||| | ||| | |||| || || || || ||| | | || || |||||| || Sbjct 14552 GGATTTGT--AACG-TCGTATACCTTTTCACAACCTAATGCAATCAGTAGTCTATCTGCA 14608 Query 16076 ACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATT 16135 ||||| || | |||||| ||| ||||| ||||| || | || || ||||| | Sbjct 14609 ACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAGTTGACAGGTAGG 14668 Query 16136 GCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACA 16195 || || || || | || ||||| |||| ||| ||||| | || || | ||| || | Sbjct 14669 GCGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAATGATTTGTCTGACAATT 14728 Query 16196 CTATTTAACGGAGGGTTTAAT--AAGTGTTTAAACATTATACAAGCAAAATCACAATGCA 16253 | || | | |||| | | || ||| ||| | | |||||||||||| ||| | Sbjct 14729 TT-TTCGTCTG-GGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCAAAATCGGTATGTA 14786 Query 16254 ATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTT 16313 | ||||| || |||| || | |||||| || || || | ||||||||| | |||| | Sbjct 14787 AACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGCATCAAACCTCTCT 14846 Query 16314 TTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAA 16373 |||| | ||| || || | |||||||||||||| ||||| ||||||||||| || |||| Sbjct 14847 TTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCTTCAACAGCAGCAA 14906 Query 16374 ATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaat 16433 |||| ||||| | ||| | || || |||| | | ||||||||| ||||| | Sbjct 14907 ATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCCATTTTAAGGCCCATT 14966 Query 16434 ttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtt--tttttC 16491 || |||| || | ||| || | || |||||||| ||| || |||| ||| | Sbjct 14967 CGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAAT-AAGAATTCACTTTCC 15025 Query 16492 TTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551 |||| |||| || |||||||| || | |||| ||| |||| |||||||| || || Sbjct 15026 TTTG-GATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGAATGAATGTTTTC 15084 Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAA 16611 ||| || || || ||||| || ||| |||| || | ||||| || ||| | || Sbjct 15085 CATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAACATCACTTGAGAA 15144 Query 16612 CCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA---- 16667 | || |||| ||||| || ||||| ||||| ||| ||||| ||||| || | Sbjct 15145 ATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAGAACGCTAGAACTCT 15204 Query 16668 TGTGTTTAATAAAAttt--ttttCGTT--ATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 || | || || ||| |||||||| |||| | ||| ||| ||| |||||| Sbjct 15205 TGAAATGAAGAATCTTTCATTTTCGTTCAATCT-ATTGTT----CCAATCATGCAAATCT 15259 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 || || | ||| | || || ||||||| ||||| || | ||||| || ||||||| | Sbjct 15260 TTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTGTACATTTGC 15319 Query 16784 CATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819 || || || | || || ||||| | |||| || Sbjct 15320 CAAATTTCGTGATACTTGATTGGAAAGAGAACAAAC 15355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508132243400